pypulchra 1.0.0

Python bindings for the pulchra CA -> full bb trace library

Python bindings for the pulchra CA -> full bb trace library README ======

Description

Modified PULCHRA 3.07 release for c++ / python library. Turn CA pdbs into full-atom pdbs

Installation

Requirements

• A working c++ compiler (gcc/clang)

pip install pypulchra

Usage

Commandline

pypulchra --input-pdb my.pdb --output-pdb out.pdb

Api

see pypulchra/__init__.py

Notes/TODOs

Bindings initially generated with

https://github.com/RosettaCommons/binder

[ ] add cif support

PULCHRA User’s Manual

PowerfUL CHain Restoration Algorithm Version 3.07

Copyright (c) 2000-2009 Piotr Rotkiewicz

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.