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Python implementation of RETROICOR.

Project description

PyRETROICOR

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Python implementation of RETROICOR (Glover et al., 2000) - physiology regressors for fMRI preprocessing.

Dependencies

The required dependencies to use the software are:

  • Python >= 3.5
  • NumPy >= 1.18
  • Nibabel >= 2.5

Install

First make sure you have installed all the dependencies listed above. Then you can install pyretroicor by running the following command in a command prompt:

pip install -U --user pyretroicor

Reference

Glover, G. H., Li, T. Q., & Ress, D. (2000). Image‐based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine, 44(1), 162-167.

MATLAB implementation from: https://github.com/mkassinopoulos/PRF_estimation

Support

Please use GitHub issues <https://github.com/htwangtw/pyretroicor/issues> for questions, bug reports or feature requests.

License

This project is licensed under BSD-3-Clause <https://opensource.org/licenses/BSD-3-Clause>.

History

0.0.3 (2020-07-03)

  • Fix fourier transformation

0.0.2 (2020-07-01)

  • First release on PyPI.

Project details


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