pyrfu 2.3.3

Python Space Physics Environment Data Analysis

The Python package pyrfu is a software based on the IRFU-MATLAB library to work with space data, particularly the Magnetospheric MultiScale (MMS) mission.

It is distributed under the open-source MIT license.

Full documentation can be found here

Instalation

The package pyrfu has been tested only for Mac OS. pyrfu requires FFTW3 . Install FFTW3 using homebrew and set temporary environmental variables, such that pyrfu finds fftw:

brew install fftw
export DYLD_LIBRARY_PATH=/usr/local/lib
export LDFLAGS="-L/usr/local/lib"
export CFLAGS="-I/usr/local/include"

Using PyPi

pyrfu is available for pip.

pip install pyrfu

From sources

The sources are located on GitHub:

https://github.com/louis-richard/irfu-python

1. Clone the GitHub repo:

Open a terminal and write the below command to clone in your PC the pyrfu repo:

git clone https://github.com/louis-richard/irfu-python.git
cd pyrfu

2. Create a virtual env

pyrfu needs a significant number of dependencies. The easiest way to get everything installed is to use a virtual environment.

• Anaconda

You can create a virtual environment and install all the dependencies using conda with the following commands:

pip install conda
conda create -n pyrfu
source activate pyrfu

• Virtual Env

Virtualenv can also be used:

pip install virtualenv
virtualenv pyrfu
source pyrfu/bin/activate

3. Install the package via the commands:

python setup.py install

5) (Optional) Generate the docs: install the extra dependencies of doc and run the setup.py file:

pip install pyrfu
python setup.py build_sphinx

Once installed, the doc can be generated with:

cd doc
make html

Dependencies

The required dependencies are:

• astropy >=4.0.0

• cycler >=0.10.0

• cdflib >=0.3.20

• cython >=0.29.21

• matplotlib >=3.2.1

• numba >=0.52.0

• numpy >=1.18.1

• Pillow >=7.1.0

• pandas >=1.0.3

• pyfftw >=0.12.0

• python-dateutil >=2.8.1

• requests >=2.23.0

• Sphinx >=3.0.3

• scipy >=1.4.1

• seaborn >=0.10.1

• setuptools >=47.3.1

• sfs >=0.5.0

• tqdm >=4.46.0

• xarray >=0.15.0

Testing dependencies are:

• pytest >= 2.8

Extra testing dependencies:

• coverage >= 4.4

• pylint >= 1.6.0

Usage

To import generic space plasma physics functions

from pyrfu import pyrf

To import functions specific to MMS mission

from pyrfu import mms

To import plotting functions

from pyrfu import plot as pltrf

Configuration

Configuration settings are set in the CONFIG hash table in the mms_config.py file.

Credits

This software was developped by Louis RICHARD ([e-mail]) based on the IRFU-MATLAB library.

Acknowledgement

Please use the following to acknowledge use of pyrfu in your publications: Data analysis was performed using the pyrfu analysis package available at https://github.com/louis-richard/irfu-python

Additional Information

MMS Science Data Center: https://lasp.colorado.edu/mms/sdc/public/

MMS Datasets: https://lasp.colorado.edu/mms/sdc/public/datasets/

MMS - Goddard Space Flight Center: http://mms.gsfc.nasa.gov/