API client CLI/SDK for PierianDx web services

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pyriandx

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pyriandx is CLI client and Python SDK/Library for PierianDx Clinical Genomics Workspace (CGW) web services -- https://umccr.github.io/pyriandx/

TL;DR

  • Install through pip like so

    pip install pyriandx

  • Export PDX_ environment variables

    export PDX_USERNAME=<YOUR_PierianDx_CGW_LOGIN_EMAIL>
export PDX_PASSWORD=<YOUR_PierianDx_CGW_LOGIN_PASSWORD>
export PDX_INSTITUTION=<ASK_YOUR_PierianDx_CGW_ACCOUNT_MANAGER>
export PDX_BASE_URL=https://app.pieriandx.com/cgw-api/v2.0.0

  • Print CLI command help

    pyriandx version
pyriandx help
pyriandx case help
pyriandx list help
pyriandx create help
pyriandx upload help
pyriandx run help
pyriandx job help
pyriandx poll help
pyriandx report help

  • More examples/tutorials available at User Guide

License

MIT License and DISCLAIMER

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This version

0.4.0

0.3.0

0.3.0rc1 pre-release

0.2.0

0.1.13

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