API client CLI/SDK for PierianDx web services
Project description
pyriandx
pyriandx
is CLI client and Python SDK/Library for PierianDx Clinical Genomics Workspace (CGW) web services -- https://umccr.github.io/pyriandx/
TL;DR
-
Install through
pip
like sopip install pyriandx
-
Export
PDX_
environment variablesexport PDX_USERNAME=<YOUR_PierianDx_CGW_LOGIN_EMAIL> export PDX_PASSWORD=<YOUR_PierianDx_CGW_LOGIN_PASSWORD> export PDX_INSTITUTION=<ASK_YOUR_PierianDx_CGW_ACCOUNT_MANAGER> export PDX_BASE_URL=https://app.pieriandx.com/cgw-api/v2.0.0
-
Print CLI command help
pyriandx version pyriandx help pyriandx case help pyriandx list help pyriandx create help pyriandx upload help pyriandx run help pyriandx job help pyriandx poll help pyriandx report help
-
More examples/tutorials available at User Guide
License
MIT License and DISCLAIMER
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