pyrobex 0.4.1

python bindings for ROBEX brain extraction

pyrobex

Python bindings for ROBEX brain extraction.

This package comes with ROBEX v1.2 for Linux. Windows is not currently supported.

• Free software: BSD license

• Documentation: https://pyrobex.readthedocs.io.

Install

The easiest way to install the package is with:

pip install pyrobex

Alternatively, you can download the source and run:

python setup.py install

Basic Usage

This package provides a CLI (to the CLI) of ROBEX for convenience and testing which can be accessed through, e.g.,:

robex path/to/t1w_image.nii path/to/stripped.nii path/to/mask.nii

The real use-case of this package is by importing robex and using it within another script or neuroimaging pipeline, e.g.,:

import nibabel as nib
from pyrobex.robex import robex
image = nib.load('path/to/t1w_image.nii')
stripped, mask = robex(image)

History

0.4.1 (2021-05-06)

• Improve logging.

0.4.0 (2021-05-06)

• Fix logging in CLI.

0.3.0 (2021-05-06)

• Fix to antspy backend.

0.2.0 (2021-05-06)

• Fixes the distribution of ROBEX on PyPI.

0.1.0 (2021-05-05)

• First release on PyPI.