pyROSE is an easy to install and run python library of ROSE (Rank Ordering of Super-Enhancers) http://younglab.wi.mit.edu/super_enhancer_code.html
If you use this library for your analysis please cite the following papers:
Warren A. Whyte, David A. Orlando, Denes Hnisz, Brian J. Abraham, Charles Y. Lin, Michael H. Kagey, Peter B. Rahl, Tong Ihn Lee and Richard A. Young, Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes, Cell 153, 307-319, April 11, 2013
Jakob Lovén, Heather A. Hoke, Charles Y. Lin, Ashley Lau, David A. Orlando, Christopher R. Vakoc, James E. Bradner, Tong Ihn Lee, and Richard A. Young, Selective Inhibition of Tumor Oncogenes by Disruption of Super-enhancers, Cell 153, 320-334, April 11, 2013
How to install?
Install from PyPi
pip install pyrose
Install from the source
python setup.py install
How to run?
pyrose –help
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