A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.8-cp311-cp311-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 1d992151899c9d90f20b203bf54e65c95def5d8b339ae8fd5f36b17a02871b7f |
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MD5 | 6ab5cb595df30ae6dbc4ea16a66d8a46 |
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BLAKE2b-256 | 2a7165285d51413c16f6e733003d2c1d9e5d681601b1d73c0a069237f0b160ba |
Hashes for PyRuSH-1.0.8-cp311-cp311-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 5da1659f47dee59f0dc27fa0233c9fa495d42ca9c73c1c7ec347325407b26b14 |
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MD5 | 0e03b31366eb68b4d920439cad7b8417 |
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BLAKE2b-256 | cfc3229ffcbf16dc40c66bfd02f87132879921795ff03014de3d78492f429e57 |
Hashes for PyRuSH-1.0.8-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 4e32355c17353884adec01bc725786478fbcc620120e6c9f431485448d3a541e |
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MD5 | a51b3468d16095106d483c66fcffcc38 |
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BLAKE2b-256 | c3d341293385326234e67e11a40e078dafb01602231bdb0763b7923c58293e57 |
Hashes for PyRuSH-1.0.8-cp311-cp311-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | cf7c5f9ac00ba33eaef981827e01901dd992cb816924c696cd83fee22beb3275 |
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MD5 | 9ca407a150fe8dca946082e1f34e96bd |
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BLAKE2b-256 | f8abc8da76b8e9e9b21f61b15f47fd48cdb003c59d696aaa8f61ffdc5d9c1b7b |
Hashes for PyRuSH-1.0.8-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 1e6abb87514c0bf8d8bbd7bee9835c70c7a03a2d72c616463f94524b05a05c13 |
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MD5 | c17c69e4eca24a470ce812d1b64e5cee |
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BLAKE2b-256 | 2d0de4a2fc1db36f5c71279a555c59ec45fb0410b2ac86f2af9d777b4251e6c2 |
Hashes for PyRuSH-1.0.8-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | a9fc7376c02e818fbcc48979ae2426291a854b27e1f99a1d10dd2b7eb16392fc |
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MD5 | 0be44f16505075993579abf095f68753 |
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BLAKE2b-256 | 383ab5702a38c9daf6736890de37fd6d1c8155034d7f7f0c0f43dbd4e46ae350 |
Hashes for PyRuSH-1.0.8-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 8b72c708229e0c84e01c25e8ccf381e8e9c39d6870b02f73eadb05a3d6ac5d84 |
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MD5 | 264bcbc50c578a4ad856aa6133c2616c |
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BLAKE2b-256 | a2cbe4ec63abcadf675f2554fc62fcfba2015f291d0d56cfddc6fa76e4064ceb |
Hashes for PyRuSH-1.0.8-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 377774acdace71b8c52ac819dacd42ad6a376c8b79980a066cc8270dd5faa049 |
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MD5 | e4d1b7197c1233ab5b8e011c45123c03 |
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BLAKE2b-256 | c0632e6f8be4895417402c533b0ffc74eba9dd0df4f280cdd8c2a414dbffd36f |
Hashes for PyRuSH-1.0.8-cp310-cp310-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | 89f0d4f94a4b2d9ea32045154dc1b96c98a082f7844cbb3d0b305ea29f9bf1a4 |
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MD5 | 78c18ea740e29af3ed2c36733906fc06 |
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BLAKE2b-256 | 59dd8a20194cbb827daf6af0ff7d500a16484f9a6551470ca304e22c75700ca5 |
Hashes for PyRuSH-1.0.8-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 0286e340bf3bcd237d8dff3cc94891f1761f4ce42c09bf763ea7dca49dbf26cc |
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MD5 | d84608575b40ffa914dd36024690cfc8 |
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BLAKE2b-256 | 11beb20c75d517eaa9d57b1a20b12023c6080268ce0b9f0bec49a0d8dbfeca91 |
Hashes for PyRuSH-1.0.8-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | e6e09c2576bb42d6d9f8640af9fdc2483e0759a5efa209c0a596c2d39ceb8ca2 |
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MD5 | 922458ee8a18802867d99c04a461a6a6 |
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BLAKE2b-256 | 85871a3cd324aa8747aa791a1fff5110bc00ef6b34109a39543bb51f1cc43184 |
Hashes for PyRuSH-1.0.8-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 6565c903d9dfcdadfb056d8c4ba81dabfe5ab5a4f1a9f41cb8b76cea08e9bf3e |
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MD5 | 1d4e33f497ed7053c05d6b938ec00d95 |
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BLAKE2b-256 | e01d5ad4e30485e649bbbf6969774704a4964aa52b3d4d9cd12e5f45c2b6eff9 |
Hashes for PyRuSH-1.0.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | f614d801600087b2842928a4c7e9b6a3c28564bcfddc0e576d54ad4994df3dfc |
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MD5 | c26418bf684533fa1815eb28228cf8da |
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BLAKE2b-256 | 3a29e78676bf008b911e174c21131e9b5371d4ccaff583e164fcf2aa07485c58 |
Hashes for PyRuSH-1.0.8-cp39-cp39-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | f21ea64ef7c4381647974003d992e41f058b9c2aa00987f8d9f611ef9f707cd6 |
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MD5 | c7dcc411e5658b6591690f0b06e7794c |
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BLAKE2b-256 | cfb636a2854a41b3ced256f9e6926ecbe2707172fdb33480a1b07074fb5c129f |
Hashes for PyRuSH-1.0.8-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | d4b99d1f29decc972555bbcaf0c4364275bdda07afeec7799e911d731d5440db |
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MD5 | 55eca608ade1bcc66bb7d886355a8c2c |
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BLAKE2b-256 | 4e4fdb5c0c6e3801e67da602a2452fea52e8e43ba28462aefff37932e4c0d02c |
Hashes for PyRuSH-1.0.8-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 7f50c7b8a4cacf903e6704a5c21c70b972380745e3fb897cdbb838b74da3da19 |
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MD5 | dbccf3749572ded1ca7c64dbef3075c0 |
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BLAKE2b-256 | 85c339704a6cf458a1a61d409c53229b45c12873e33feed903ef8d4d78e2919c |
Hashes for PyRuSH-1.0.8-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 465b390a47c352226e5be992d76f260eb9ee14204a096b3ac7cf8b986cc41088 |
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MD5 | 9b82e01f6e36d3e73126b2671a5c8341 |
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BLAKE2b-256 | 321883f86355e503940311b5f0bd3b3fcc2b146a8847e27804b04755f4026ea8 |
Hashes for PyRuSH-1.0.8-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | ef438ba1a06d23fe3d213263032468033fa800bce7c22d14b3f719e59bf4cb90 |
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MD5 | 6fb4a965f56b5545fc4aabb73ee21332 |
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BLAKE2b-256 | b7ee409050e11e4461cb985811d6b3c78cc80ef849604ce6bd94b0df9108ad8a |
Hashes for PyRuSH-1.0.8-cp38-cp38-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | 7e7eac3e9ead614ed16c5b3985f89a31bd30f0debbcd7e038eec724296fbb0e0 |
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MD5 | 47cbb713a6afb3a3982bf0f91afabcfa |
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BLAKE2b-256 | 3fe78fd0ac9130acc17d648dc416df558a971bf8718a00037ae4f1ee54f85662 |
Hashes for PyRuSH-1.0.8-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | ab423c307ef74cd3784761cd07935736755b50205f6470c7f9b6b628da0d85d0 |
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MD5 | c1bccde0286de41882c6acbf4d31156f |
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BLAKE2b-256 | 7dacf4792a62231887c40ea20ac1bef5d4b83679d87ccba1a13249318231b632 |
Hashes for PyRuSH-1.0.8-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 78439d8dba35290d2bd9e444bb0bf24a91ebd82e6ec8103d77c4ed98674ba773 |
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MD5 | 15b1c3e8720dc4ae8377b2e052500314 |
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BLAKE2b-256 | a12043a57859f5ae7faa48f3ab45426682558929fda18356fedff19d613551bd |
Hashes for PyRuSH-1.0.8-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 7e8bf422905d55cd6dbe8a41bb247a9bed4c81280d714c58e481152cd1b46f05 |
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MD5 | f7fbc4e1864020258fc141939a5703a1 |
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BLAKE2b-256 | b74436938dcb51614b53f492149e55cde287164ddc21d758f8c8ce09ef5dabfd |
Hashes for PyRuSH-1.0.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 23b4e232d8eed9a9474891609e234e8bc9e891ba85086b2f02a130ff79ddf436 |
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MD5 | 7b3a5f0e8704fa62facbb33db57bcebb |
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BLAKE2b-256 | e0727535ddcf41233f4911602f705c5559144b3b4ed62aaa6cef68f08f8c8424 |
Hashes for PyRuSH-1.0.8-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 1f5039b663025cf248b0b9d85458bb9d7d0f906ef14c910a42ea79a6da221847 |
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MD5 | 45e7e604c332e47e9d377e3db87d8440 |
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BLAKE2b-256 | afeae69794674cd4dc2119ad08affd4d8dbfcd894aef80e0367e76db4aa649fb |
Hashes for PyRuSH-1.0.8-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 7ac1cd49f9287cf9e8a88e889a44c891c8ef5b6c16d0aac33d9b9446a8685404 |
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MD5 | c515e8689762570b7ea104250159e575 |
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BLAKE2b-256 | 8215d55b524600138691ee7f1c749e12032fbf2742283344af7f1605d8c24d99 |
Hashes for PyRuSH-1.0.8-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 381568ff2650adaee06d68c5c897dbe4a5f8b29aee0b67b265043c5d3fc74c14 |
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MD5 | ce08c5a7f1bfdd098e7a7afe7373178e |
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BLAKE2b-256 | a5ae5e7aaade0aab556804aac53a72dcb2ddf0206c43b784b64289c3a74932ff |
Hashes for PyRuSH-1.0.8-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 80880e8f4c2e293ea48e33fbeb72ec412ed1f22fdfdd2d892fc5e1be214a0063 |
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MD5 | 1fc639c1da2192add7586429af90e81d |
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BLAKE2b-256 | 70fb65491d0d02bb874f1721071175ef49494c82219f4ca77c88631fcd8085dd |
Hashes for PyRuSH-1.0.8-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 7e99dd00b211c7aa971c30a3126f1fce3ea6dd83ca475bf72b303e2670f0445b |
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MD5 | 72aa085d1cee5bad56791c1885ee021f |
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BLAKE2b-256 | a8da3a04ae2ae383ea77be791d263e9a72c5d828fd07128f71009d28fa3603ca |