pysam — a Python package for reading, manipulating, and writing genomic data sets.
pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.
This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.
Release files for pysam 0.24.1
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pysam-0.24.1.tar.gz | 5.4 MB | Details |
Built distributions (wheels)
Total release size: 158.9 MB
Release files / pysam-0.24.1.tar.gz
| Download URL | pysam-0.24.1.tar.gz |
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| Size | 5.4 MB |
| Tags | Source |
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| Tags | CPython 3.9 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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| Download URL | pysam-0.24.1-cp39-cp39-macosx_11_0_arm64.whl |
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| Tags | CPython 3.9 macOS 11.0+ ARM64 |
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| Size | 3.2 MB |
| Tags | CPython 3.9 macOS 10.9+ x86-64 |
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