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Package for reading, manipulating, and writing genomic data

Project description

pysam — a Python package for reading, manipulating, and writing genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.

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pysam-0.22.0.tar.gz (4.6 MB view hashes)

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pysam-0.22.0-cp312-cp312-manylinux_2_28_x86_64.whl (25.1 MB view hashes)

Uploaded CPython 3.12 manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp312-cp312-manylinux_2_28_aarch64.whl (24.4 MB view hashes)

Uploaded CPython 3.12 manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp312-cp312-macosx_11_0_arm64.whl (8.0 MB view hashes)

Uploaded CPython 3.12 macOS 11.0+ ARM64

pysam-0.22.0-cp312-cp312-macosx_10_9_x86_64.whl (8.4 MB view hashes)

Uploaded CPython 3.12 macOS 10.9+ x86-64

pysam-0.22.0-cp311-cp311-manylinux_2_28_x86_64.whl (25.1 MB view hashes)

Uploaded CPython 3.11 manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp311-cp311-manylinux_2_28_aarch64.whl (24.5 MB view hashes)

Uploaded CPython 3.11 manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp311-cp311-macosx_11_0_arm64.whl (8.0 MB view hashes)

Uploaded CPython 3.11 macOS 11.0+ ARM64

pysam-0.22.0-cp311-cp311-macosx_10_9_x86_64.whl (8.4 MB view hashes)

Uploaded CPython 3.11 macOS 10.9+ x86-64

pysam-0.22.0-cp310-cp310-manylinux_2_28_x86_64.whl (21.9 MB view hashes)

Uploaded CPython 3.10 manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp310-cp310-manylinux_2_28_aarch64.whl (21.3 MB view hashes)

Uploaded CPython 3.10 manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp310-cp310-macosx_11_0_arm64.whl (8.0 MB view hashes)

Uploaded CPython 3.10 macOS 11.0+ ARM64

pysam-0.22.0-cp310-cp310-macosx_10_9_x86_64.whl (6.1 MB view hashes)

Uploaded CPython 3.10 macOS 10.9+ x86-64

pysam-0.22.0-cp39-cp39-manylinux_2_28_x86_64.whl (24.2 MB view hashes)

Uploaded CPython 3.9 manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp39-cp39-manylinux_2_28_aarch64.whl (23.6 MB view hashes)

Uploaded CPython 3.9 manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp39-cp39-macosx_11_0_arm64.whl (5.7 MB view hashes)

Uploaded CPython 3.9 macOS 11.0+ ARM64

pysam-0.22.0-cp39-cp39-macosx_10_9_x86_64.whl (8.4 MB view hashes)

Uploaded CPython 3.9 macOS 10.9+ x86-64

pysam-0.22.0-cp38-cp38-manylinux_2_28_x86_64.whl (24.4 MB view hashes)

Uploaded CPython 3.8 manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp38-cp38-manylinux_2_28_aarch64.whl (23.8 MB view hashes)

Uploaded CPython 3.8 manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (21.8 MB view hashes)

Uploaded CPython 3.8 manylinux: glibc 2.17+ x86-64

pysam-0.22.0-cp38-cp38-macosx_10_9_x86_64.whl (8.4 MB view hashes)

Uploaded CPython 3.8 macOS 10.9+ x86-64

pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl (23.6 MB view hashes)

Uploaded CPython 3.7m manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp37-cp37m-manylinux_2_28_aarch64.whl (23.0 MB view hashes)

Uploaded CPython 3.7m manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp37-cp37m-macosx_10_9_x86_64.whl (8.3 MB view hashes)

Uploaded CPython 3.7m macOS 10.9+ x86-64

pysam-0.22.0-cp36-cp36m-manylinux_2_28_x86_64.whl (18.4 MB view hashes)

Uploaded CPython 3.6m manylinux: glibc 2.28+ x86-64

pysam-0.22.0-cp36-cp36m-manylinux_2_28_aarch64.whl (17.7 MB view hashes)

Uploaded CPython 3.6m manylinux: glibc 2.28+ ARM64

pysam-0.22.0-cp36-cp36m-macosx_10_9_x86_64.whl (3.4 MB view hashes)

Uploaded CPython 3.6m macOS 10.9+ x86-64

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