Skip to main content

pysam

Project description

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pysam-cabbage-0.15.3.tar.gz (1.6 MB view details)

Uploaded Source

File details

Details for the file pysam-cabbage-0.15.3.tar.gz.

File metadata

  • Download URL: pysam-cabbage-0.15.3.tar.gz
  • Upload date:
  • Size: 1.6 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/44.0.0 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.8.0

File hashes

Hashes for pysam-cabbage-0.15.3.tar.gz
Algorithm Hash digest
SHA256 172364a01c2c4eaf469e68a1d4774a4851e1eb43be2573a7f747d0ccd8458b49
MD5 7ddc1a8c38c21a03d326374001974e44
BLAKE2b-256 20ee0a784b6bebbda418a284f9787edfcdf2477a93c9f2f7f2ccb3bc9e882297

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page