pysam
Project description
pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.3.1, samtools-1.3.1 and bcftools-1.3.1.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Hashes for pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 4f598c325cefba2b09adc53e4e7fd669f6855ab6db52f27ff4d73da48bc2b2a9 |
|
MD5 | 5d6f5dd879daf165dd86314b2f0b5ce6 |
|
BLAKE2b-256 | 0b28cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f |
Hashes for pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 1943e27e8584dacbd1098fc17b55c6fc80765c1df6b9fb4844d3925232453afe |
|
MD5 | 8af19e14f0b351b8edb53d0766624e19 |
|
BLAKE2b-256 | 3e6f2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1 |
Hashes for pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f3280509966dbc44e1d5669ce9fe523e67eebe970f304e626f210df999b12731 |
|
MD5 | 4d383862d881d3ff35f5555ba4d4bd13 |
|
BLAKE2b-256 | 39ba91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e |
Hashes for pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9de9d06f2de8949d062cd995bee982940283c309426d7ee287a2de22e3b2e92e |
|
MD5 | c925219679f8b5abc9f5052cd1a79d15 |
|
BLAKE2b-256 | 4bff7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365 |
Hashes for pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0196588bf9a2d499abf1882e3c04431dc81faaa4432feddd6eb03fe7a430a62e |
|
MD5 | 5002e53b6fb8723761ce9184533189dd |
|
BLAKE2b-256 | 93f5bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf |