pysam

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for grepall from gravatar.com grepall Avatar for johnm from gravatar.com johnm

Unverified details

These details have not been verified by PyPI
Project links
Meta
Classifiers
Report project as malware

Project description

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for grepall from gravatar.com grepall Avatar for johnm from gravatar.com johnm

Unverified details

These details have not been verified by PyPI
Project links
Meta
Classifiers

Release history Release notifications | RSS feed

0.23.0

0.22.1

0.22.0

0.21.0

0.20.0

0.19.1

0.19.0

0.18.0

0.17.0

0.16.0.1

0.16.0

This version

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.1

0.14

0.13

0.12.0.1

0.12

0.11.2.2

0.11.2.1

0.11.2

0.11.1

0.11

0.10.0

0.9.1.4

0.9.1.3

0.9.1.2

0.9.1.1

0.9.1

0.9.0

0.8.4

0.8.3

0.8.2.1

0.8.2

0.8.1

0.8.0

0.7.8

0.7.7

0.7.6

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7

0.6

0.4.1

0.4

0.3.1

0.3

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pysam-0.15.4.tar.gz (1.6 MB view details)

Uploaded Source

Built Distributions

pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (12.0 MB view details)

Uploaded CPython 3.8 manylinux: glibc 2.12+ x86-64

pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (9.2 MB view details)

Uploaded CPython 3.8 manylinux: glibc 2.12+ i686

pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (2.7 MB view details)

Uploaded CPython 3.8 macOS 10.9+ x86-64

pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (10.7 MB view details)

Uploaded CPython 3.7m manylinux: glibc 2.12+ x86-64

pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (8.4 MB view details)

Uploaded CPython 3.7m manylinux: glibc 2.12+ i686

pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (5.0 MB view details)

Uploaded CPython 3.7m macOS 10.6+ Intel (x86-64, i386)

pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (10.7 MB view details)

Uploaded CPython 3.6m manylinux: glibc 2.12+ x86-64

pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (8.4 MB view details)

Uploaded CPython 3.6m manylinux: glibc 2.12+ i686

pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (5.1 MB view details)

Uploaded CPython 3.6m macOS 10.6+ Intel (x86-64, i386)

pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (10.6 MB view details)

Uploaded CPython 3.5m manylinux: glibc 2.12+ x86-64

pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (8.3 MB view details)

Uploaded CPython 3.5m manylinux: glibc 2.12+ i686

pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (5.0 MB view details)

Uploaded CPython 3.5m macOS 10.6+ Intel (x86-64, i386)

pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (9.8 MB view details)

Uploaded CPython 2.7mu manylinux: glibc 2.12+ x86-64

pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (7.7 MB view details)

Uploaded CPython 2.7mu manylinux: glibc 2.12+ i686

pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (9.8 MB view details)

Uploaded CPython 2.7m manylinux: glibc 2.12+ x86-64

pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (7.7 MB view details)

Uploaded CPython 2.7m manylinux: glibc 2.12+ i686

pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (5.0 MB view details)

Uploaded CPython 2.7m macOS 10.6+ Intel (x86-64, i386)

File details

Details for the file pysam-0.15.4.tar.gz.

File metadata

  • Download URL: pysam-0.15.4.tar.gz
  • Upload date:
  • Size: 1.6 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: Python-urllib/3.7

File hashes

Hashes for pysam-0.15.4.tar.gz
Algorithm Hash digest
SHA256 a535e15cbd6e27f4ab74cabca30ca1df7eea283cb91d3b536d47fe113fee066f
MD5 fed157466d6e267e32593119c05247b2
BLAKE2b-256 257e098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 12.0 MB
  • Tags: CPython 3.8, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 5a9730d9775dc30a8cc197ca3e5340b7c3cb63b66c387ecfd8e665426f083f65
MD5 6306fae1411d8de2e7095a8b1bc5ce83
BLAKE2b-256 78630e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl.

File metadata

  • Download URL: pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl
  • Upload date:
  • Size: 9.2 MB
  • Tags: CPython 3.8, manylinux: glibc 2.12+ i686
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl
Algorithm Hash digest
SHA256 28fd770354ecf621ee47425bfdcf012097fa7a8ff590b49ec953d059221886c2
MD5 1c2c7cb3c574cf62f3007e412634824e
BLAKE2b-256 d377b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl
  • Upload date:
  • Size: 2.7 MB
  • Tags: CPython 3.8, macOS 10.9+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.6.0 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.7.5

File hashes

Hashes for pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 62b72de5af5b8550f376a580fecb23b81d989140cf95f8465fef2c3d96006424
MD5 342ba115f3cf51074fac015596c3594a
BLAKE2b-256 ae1d8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 10.7 MB
  • Tags: CPython 3.7m, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 333e9e73addb0579aa8af08c6618b359bd038a3710428b7ce1caef0075392b3c
MD5 befd0c75800b2b85a9d6d8ac169df840
BLAKE2b-256 63ee2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl.

File metadata

  • Download URL: pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl
  • Upload date:
  • Size: 8.4 MB
  • Tags: CPython 3.7m, manylinux: glibc 2.12+ i686
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl
Algorithm Hash digest
SHA256 179e68c5acb8cc6a79a79441ba6cffb88d7c3afb74c7b170395c248cb7b9f138
MD5 20e01df89f2e09f3e9927ad362e66d1d
BLAKE2b-256 7e46d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl.

File metadata

  • Download URL: pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl
  • Upload date:
  • Size: 5.0 MB
  • Tags: CPython 3.7m, macOS 10.6+ Intel (x86-64, i386)
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.6.0 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.7.5

File hashes

Hashes for pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl
Algorithm Hash digest
SHA256 5bcf5d49922aeaccd0dbf0b3e4327b03be2883814bf2476e83f20fc24d7be02b
MD5 87a74a9e161a6ee40ba800421b6ab43a
BLAKE2b-256 c1b94a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 10.7 MB
  • Tags: CPython 3.6m, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 d9f116b2e32b678bbd95ba0c83a449d0a59f2deb04a6fc02f42b5cd9e406bde5
MD5 1d850d883dd8a8604f81a09b6f4b5e9d
BLAKE2b-256 2b012be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl.

File metadata

  • Download URL: pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl
  • Upload date:
  • Size: 8.4 MB
  • Tags: CPython 3.6m, manylinux: glibc 2.12+ i686
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl
Algorithm Hash digest
SHA256 0f3e42cbc9bac07cf6a880c2ae318c24aea20f43a3f3562e53068266627cb7a7
MD5 8132899043fabeb5a41108e12d242e1b
BLAKE2b-256 47cca9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl.

File metadata

  • Download URL: pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl
  • Upload date:
  • Size: 5.1 MB
  • Tags: CPython 3.6m, macOS 10.6+ Intel (x86-64, i386)
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.6.0 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.7.5

File hashes

Hashes for pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl
Algorithm Hash digest
SHA256 4ddcb84e471aff2f55beb5ed2d368dc6e773947c628a1a7b6d5ceec9c141ce51
MD5 a82e620fc982f7159077b52ab893e41e
BLAKE2b-256 b278df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 10.6 MB
  • Tags: CPython 3.5m, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 00c7f094be02ba8daf2feb51467b70142f9cca22fb5336b504bc58568a2500de
MD5 bae78dd589b5ef64caeb75c468a45207
BLAKE2b-256 3fb4075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl.

File metadata

  • Download URL: pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl
  • Upload date:
  • Size: 8.3 MB
  • Tags: CPython 3.5m, manylinux: glibc 2.12+ i686
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl
Algorithm Hash digest
SHA256 2581ab403fdba02e2261cf2f9df783f24de5530e1f77c84236707f8d8706cd91
MD5 6918fd7ec3e9cfbd4d8f0bdcf2560a05
BLAKE2b-256 559cb064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl.

File metadata

  • Download URL: pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl
  • Upload date:
  • Size: 5.0 MB
  • Tags: CPython 3.5m, macOS 10.6+ Intel (x86-64, i386)
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.6.0 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.7.5

File hashes

Hashes for pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl
Algorithm Hash digest
SHA256 7c358f69620e7b9af7548a62ca2a1fb6b51c03fcdc79a0ca8d1839ad92a532ce
MD5 1bebb24809cc5dc1222b3d38119b8cde
BLAKE2b-256 a9c6a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 9.8 MB
  • Tags: CPython 2.7mu, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 3d5158231cab88cb8a931b78f34fb6eb939a093cb8d5273452cc12d3206e445e
MD5 a815d67eb7b8afa08a46cfc660a6ad2f
BLAKE2b-256 687ba54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl.

File metadata

  • Download URL: pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl
  • Upload date:
  • Size: 7.7 MB
  • Tags: CPython 2.7mu, manylinux: glibc 2.12+ i686
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl
Algorithm Hash digest
SHA256 00a1f62e704410343ef6a6232f5bdd29f67f88326a89757e665dee035ef36112
MD5 1ab18052a07f280038c5f56f023d2cf9
BLAKE2b-256 0ef32b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl.

File metadata

  • Download URL: pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 9.8 MB
  • Tags: CPython 2.7m, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 495815ef466aefa80d949ac449cd364f21cb20ee56b1a0bd623352ad3f73bf14
MD5 b845492723129c1932a0bc611c5f61ab
BLAKE2b-256 f2c18f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl.

File metadata

  • Download URL: pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl
  • Upload date:
  • Size: 7.7 MB
  • Tags: CPython 2.7m, manylinux: glibc 2.12+ i686
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.5.6

File hashes

Hashes for pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl
Algorithm Hash digest
SHA256 5b6a2258e326204ee94bf4d482d9a137ce8cbb3f3cefada42c7f26802d15b95d
MD5 4a9db12b3a5257157fd886c0ae4d7622
BLAKE2b-256 1b2860742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd

See more details on using hashes here.

File details

Details for the file pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl.

File metadata

  • Download URL: pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl
  • Upload date:
  • Size: 5.0 MB
  • Tags: CPython 2.7m, macOS 10.6+ Intel (x86-64, i386)
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.6.0 requests-toolbelt/0.9.1 tqdm/4.41.1 CPython/3.7.5

File hashes

Hashes for pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl
Algorithm Hash digest
SHA256 0b0f407ad96b3bd492017ee82a317ac0fc68dc858ecba9119e4ae69b1cda9910
MD5 e3f2be4179d264da236d91c4d0248bd0
BLAKE2b-256 bc995b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page