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pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

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0.23.0

0.22.1

0.22.0

0.21.0

0.20.0

This version

0.19.1

0.19.0

0.18.0

0.17.0

0.16.0.1

0.16.0

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.1

0.14

0.13

0.12.0.1

0.12

0.11.2.2

0.11.2.1

0.11.2

0.11.1

0.11

0.10.0

0.9.1.4

0.9.1.3

0.9.1.2

0.9.1.1

0.9.1

0.9.0

0.8.4

0.8.3

0.8.2.1

0.8.2

0.8.1

0.8.0

0.7.8

0.7.7

0.7.6

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7

0.6

0.4.1

0.4

0.3.1

0.3

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