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pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

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0.23.0

0.22.1

0.22.0

0.21.0

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0.20.0

0.19.1

0.19.0

0.18.0

0.17.0

0.16.0.1

0.16.0

0.15.4

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0.15.2

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0.15.0

0.14.1

0.14

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0.12.0.1

0.12

0.11.2.2

0.11.2.1

0.11.2

0.11.1

0.11

0.10.0

0.9.1.4

0.9.1.3

0.9.1.2

0.9.1.1

0.9.1

0.9.0

0.8.4

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0.8.2.1

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0.7.8

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0.7.6

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0.7.3

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0.6

0.4.1

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