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The Python Simulator for Cellular Systems - simulation and analysis tools for modelling biological systems

Project description

PySCeS is developed by the Triple-J Group for Molecular Cell Physiology in order to try model and understand the complex processes and systems which make up the living cell.

PySCeS features, amongst other things:
  • A text based model description language.

  • A structural analysis module.

  • Integrators for time simulation

  • Non-linear solvers for steady-state analysis

  • A module for performing Metabolic Control Analysis

  • A bifurcation module for systems which exhibit multiple steady states

  • A variety of extra utilites for parameter scans, data output and plotting.

  • A dynamic module loading framework.

  • SBML import and export capability.

Project details

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