Pyseqfile is a python wrapper on top of [seq_file](https://github.com/noporpoise/seq_file) which allow for reading multiple sequence file formats.
Currently supports:
FASTA & FASTQ
TO DO:
* SAM & BAM (make seq_file with htslib)
* gzipped FASTA
* gzipped FASTQ
# Install
pip install pyseqfile
# Usage
from pyseqfile import Reader
reader = Reader('path/to/seqfile{.fq,.fq,.fa,bam,.sam}')
for r in reader:
print(r)
# Benchmarks
pyseqfile is *much* faster than Biopython.
$ python benchmark.py
Reading 10k lines 100 times: Biopython : 6.6768401420122245s
Reading 10k lines 100 times: seqfile : 0.1060560290061403s
1 maintainer
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Release files for pyseqfile 0.2
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