a python package for sequence alignment, simulation and visulization
Project description
seq_align_two_vars
General info
This project is created by Jeffrey Cai under supervised by Nathan Ryan, Professor in Mathematics department of Bucknell University.
It is used to align sequences with non-uniform varaibales like time or distance. It is based on the idea of Alexandar Murph(https://github.com/cran/sawnuti). We implemented his method in this python package and not only to analysis non-uniform time intervals, but including analysis of more than one varaibles like both time and dis.
Technologies
Project is created with:
- numpy version: 1.22.4
- pandas version: 1.5.0
- matplotlib version: 3.6.0
- networkx version: 3.0
- scipy version: 1.10.0
- sklearn version: 1.2.1
Data import:
- use make_sample
- read in datafile
- input networks, generate random walk data
Setup
To run this project, install it locally using pip install:
$ pip install seq-align-two-vars
Reference guide
See https://caidog1129.github.io/seq_align_two_vars/seq_align_two_vars.html
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