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Create images from photon lists generated by a mutliscaler.

Project description


Create images from photon lists generated by a mutliscaler.

* Free software: BSD license



pip install pysight



To run the all tests run::


Note, to combine the coverage data from all the tox environments run:

.. list-table::
:widths: 10 90
:stub-columns: 1

- - Windows
- ::

set PYTEST_ADDOPTS=--cov-append

- - Other
- ::

PYTEST_ADDOPTS=--cov-append tox


0.1.0 (2017-02-27)

* First release on PyPI.

0.1.1 (2017-02-27)

* Bug fixes during installation of Numba.
* Added the ``run()`` method for ``main_multiscaler_readout``.

0.1.2 (2017-02-27)

* Includes ``tifffile`` and minor improvements.

0.1.3 (2017-02-28)

* Changed IO from ``.read()`` to ``.readlines()`` for better Linux compatibility.
* ``.tif`` is now saved frame-by-frame to save memory, and the method was renamed to ``create_tif()``.

0.1.4 (2017-02-28)

* Frames are now generated with a generator.
* Fix to installation problems of previous version.

0.1.5 (2017-02-28)

* Single-lined frames are now supported.

0.1.6 (2017-02-28)

* More tests coverage.

* Enforced a few types checks.

0.1.7 (2017-03-01)

* Potential fix to ``pip install`` issues.

* Start of TAG lens interpolation support.

0.2.0 (2017-03-05)

* Support for TAG lens added - phase interpolation and image display. Note: The algorithm currently assumes that the
pulse is triggered at the zero-phase of the TAG lens.

* ``pip`` installation fixed by requiring Numba as a prerequisite.

* Number of pixels in the "Frame" direction (x) supersedes the number of frames as listed by the user.

* Due to massive changes, one test is currently broken.

0.3.0 (2017-03-07)

* Added method ``create_array`` to Movie() that returns a deque containing the raw data generated by the
``np.histogram`` function, for visualization and analysis purposes.

* Added method ``create_single_volume`` to Movie() that sums all stacks into a single array.

* Fixed bugs in ``tag_tools``, mainly in ``verify_periodicity()``.

* Allows for more elaborate user inputs, requiring to choose which type of output you wish for.

* Basic FLIM support.

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