Create images from photon lists generated by a mutliscaler.
Project description
========
Overview
========
Create images from photon lists generated by a mutliscaler.
* Free software: BSD license
Installation
============
::
pip install pysight
Documentation
=============
https://python-pysight.readthedocs.io/
Development
===========
To run the all tests run::
tox
Note, to combine the coverage data from all the tox environments run:
.. list-table::
:widths: 10 90
:stub-columns: 1
- - Windows
- ::
set PYTEST_ADDOPTS=--cov-append
tox
- - Other
- ::
PYTEST_ADDOPTS=--cov-append tox
Changelog
=========
0.1.0 (2017-02-27)
------------------
* First release on PyPI.
0.1.1 (2017-02-27)
------------------
* Bug fixes during installation of Numba.
* Added the ``run()`` method for ``main_multiscaler_readout``.
0.1.2 (2017-02-27)
------------------
* Includes ``tifffile`` and minor improvements.
0.1.3 (2017-02-28)
------------------
* Changed IO from ``.read()`` to ``.readlines()`` for better Linux compatibility.
* ``.tif`` is now saved frame-by-frame to save memory, and the method was renamed to ``create_tif()``.
0.1.4 (2017-02-28)
------------------
* Frames are now generated with a generator.
* Fix to installation problems of previous version.
0.1.5 (2017-02-28)
------------------
* Single-lined frames are now supported.
0.1.6 (2017-02-28)
------------------
* More tests coverage.
* Enforced a few types checks.
0.1.7 (2017-03-01)
------------------
* Potential fix to ``pip install`` issues.
* Start of TAG lens interpolation support.
0.2.0 (2017-03-05)
------------------
* Support for TAG lens added - phase interpolation and image display. Note: The algorithm currently assumes that the
pulse is triggered at the zero-phase of the TAG lens.
* ``pip`` installation fixed by requiring Numba as a prerequisite.
* Number of pixels in the "Frame" direction (x) supersedes the number of frames as listed by the user.
* Due to massive changes, one test is currently broken.
0.3.0 (2017-03-07)
------------------
* Added method ``create_array`` to Movie() that returns a deque containing the raw data generated by the
``np.histogram`` function, for visualization and analysis purposes.
* Added method ``create_single_volume`` to Movie() that sums all stacks into a single array.
* Fixed bugs in ``tag_tools``, mainly in ``verify_periodicity()``.
* Allows for more elaborate user inputs, requiring to choose which type of output you wish for.
* Basic FLIM support.
Overview
========
Create images from photon lists generated by a mutliscaler.
* Free software: BSD license
Installation
============
::
pip install pysight
Documentation
=============
https://python-pysight.readthedocs.io/
Development
===========
To run the all tests run::
tox
Note, to combine the coverage data from all the tox environments run:
.. list-table::
:widths: 10 90
:stub-columns: 1
- - Windows
- ::
set PYTEST_ADDOPTS=--cov-append
tox
- - Other
- ::
PYTEST_ADDOPTS=--cov-append tox
Changelog
=========
0.1.0 (2017-02-27)
------------------
* First release on PyPI.
0.1.1 (2017-02-27)
------------------
* Bug fixes during installation of Numba.
* Added the ``run()`` method for ``main_multiscaler_readout``.
0.1.2 (2017-02-27)
------------------
* Includes ``tifffile`` and minor improvements.
0.1.3 (2017-02-28)
------------------
* Changed IO from ``.read()`` to ``.readlines()`` for better Linux compatibility.
* ``.tif`` is now saved frame-by-frame to save memory, and the method was renamed to ``create_tif()``.
0.1.4 (2017-02-28)
------------------
* Frames are now generated with a generator.
* Fix to installation problems of previous version.
0.1.5 (2017-02-28)
------------------
* Single-lined frames are now supported.
0.1.6 (2017-02-28)
------------------
* More tests coverage.
* Enforced a few types checks.
0.1.7 (2017-03-01)
------------------
* Potential fix to ``pip install`` issues.
* Start of TAG lens interpolation support.
0.2.0 (2017-03-05)
------------------
* Support for TAG lens added - phase interpolation and image display. Note: The algorithm currently assumes that the
pulse is triggered at the zero-phase of the TAG lens.
* ``pip`` installation fixed by requiring Numba as a prerequisite.
* Number of pixels in the "Frame" direction (x) supersedes the number of frames as listed by the user.
* Due to massive changes, one test is currently broken.
0.3.0 (2017-03-07)
------------------
* Added method ``create_array`` to Movie() that returns a deque containing the raw data generated by the
``np.histogram`` function, for visualization and analysis purposes.
* Added method ``create_single_volume`` to Movie() that sums all stacks into a single array.
* Fixed bugs in ``tag_tools``, mainly in ``verify_periodicity()``.
* Allows for more elaborate user inputs, requiring to choose which type of output you wish for.
* Basic FLIM support.
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