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Create images from photon lists generated by a multiscaler.

Project description

Create images from photon lists generated by a multiscaler.

  • Free software: BSD license


At the command line:

conda install numba
conda install tifffile -c conda-forge
pip install pysight


To run the all tests run:


Note, to combine the coverage data from all the tox environments run:

set PYTEST_ADDOPTS=--cov-append
PYTEST_ADDOPTS=--cov-append tox


0.1.0 (2017-02-27)

  • First release on PyPI.

0.1.1 (2017-02-27)

  • Bug fixes during installation of Numba.
  • Added the run() method for main_multiscaler_readout.

0.1.2 (2017-02-27)

  • Includes tifffile and minor improvements.

0.1.3 (2017-02-28)

  • Changed IO from .read() to .readlines() for better Linux compatibility.
  • .tif is now saved frame-by-frame to save memory, and the method was renamed to create_tif().

0.1.4 (2017-02-28)

  • Frames are now generated with a generator.
  • Fix to installation problems of previous version.

0.1.5 (2017-02-28)

  • Single-lined frames are now supported.

0.1.6 (2017-02-28)

  • More tests coverage.
  • Enforced a few types checks.

0.1.7 (2017-03-01)

  • Potential fix to pip install issues.
  • Start of TAG lens interpolation support.

0.2.0 (2017-03-05)

  • Support for TAG lens added - phase interpolation and image display. Note: The algorithm currently assumes that the pulse is triggered at the zero-phase of the TAG lens.
  • pip installation fixed by requiring Numba as a prerequisite.
  • Number of pixels in the “Frame” direction (x) supersedes the number of frames as listed by the user.
  • Due to massive changes, one test is currently broken.

0.3.0 (2017-03-07)

  • Added method create_array to Movie() that returns a deque containing the raw data generated by the np.histogram function, for visualization and analysis purposes.
  • Added method create_single_volume to Movie() that sums all stacks into a single array.
  • Fixed bugs in tag_tools, mainly in verify_periodicity().
  • Allows for more elaborate user inputs, requiring to choose which type of output you wish for.
  • Basic FLIM support.

0.3.1 (2017-03-07)

  • Tiffs are now saved untiled. Depth axis is x-axis.
  • Installation should run smoothly if following the instructions.

0.3.2 (2017-03-07)

  • Added verifications on the FLIM input.
  • Bug fixes in FLIM implementation.

0.3.3 (2017-03-08)

  • Code can take care of the the infamous [-1, …, -1] index list.
  • Added debug mode in which the algorithm reads only a limited amount of lines from a file.
  • Fixed minor bug in __create_hist.
  • Decreased size of package by removing excess lines of data for tests.

0.3.4 (2017-03-09)

  • More fixes to the [-1] vector problem.
  • Added a sort function before handling the data, because of irregularities.

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Files for pysight, version 0.3.4
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