PySimPlot

Project description

PySimPlot

PySimPlot takes an alignment of two or more sequences (nucleotide or amino acid) in fasta format and then calculates the identity between them within a rolling window. The resulting data are returned plotted and optionally saved as a csv file for you to format with Excel etc.

This software is inspired by SimPlot from Stuart Ray.

Example Usage:

clustalo -i sequences.fasta -o aligned.fasta
pysimplot -i aligned.fasta -o data.csv

Example similarity plot

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This version

0.1.1

Feb 7, 2022

0.1.0

Feb 6, 2022

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Uploaded Feb 7, 2022 Python 3

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