pyslid 0.1.0

Protein Subcellular Location Image Database for OMERO

About

pyslid is a python package that calculates numerical feature sets to describe the subcellular patterns in fluorescence microscope images. The features can be used for image content-based searching in the Open Microscopy Environment using ricerca and OMERO.searcher.

For more information about pyslid, please visit http://murphylab.web.cmu.edu/software/pyslid/

Authors

Ivan Cao-Berg, Baek Hwan Cho, Jennifer Bakal and Robert F. Murphy

Lane Center for Computational Biology

School of Computer Science

Carnegie Mellon University

http://lane.compbio.cmu.edu/

References

• B.H. Cho, I. Cao-Berg, J.A. Bakal, and R.F. Murphy (2012) OMERO.searcher: Content-based image search for microscope images. Nature Methods 9:633-634.