pyteomics.cythonize

An Cython-accelerated version of common pyteomics functions

These details have not been verified by PyPI

Project links

Homepage

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Project description

This package re-implements several of Pyteomics functions in C using Cython and the Python-C API. Currently, only commonly used functions in pyteomics.mass and pyteomics.parser are implemented, providing faster sequence manipulation and mass calculations. Every effort has been made to make the user-facing interfaces identical to their pure Python counterparts.

These functions are also exposed in the package’s C-API so that other C-Extensions can make use of them.

This package also re-implements the pyteomics.mass.Composition type in C using Python’s dict as a base.

API

This package provides two modules, pyteomics.cmass and pyteomics.cparser, which mimic a subset of the APIs of pyteomics.mass and pyteomics.parser respectively. For example:

from pyteomics import cmass, mass

assert cmass.fast_mass("PEPTIDE") == mass.fast_mass("PEPTIDE")

Project details

These details have not been verified by PyPI

Project links

Homepage

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

This version

0.2.4

Jun 16, 2021

0.2.3

Jun 16, 2021

0.2.2

Nov 15, 2018

0.2.1

Jun 26, 2018

0.2.0

Sep 30, 2017

0.1.2

Oct 29, 2016

0.1.1

Oct 29, 2016

0.1.0

Jan 8, 2016

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyteomics.cythonize-0.2.4.tar.gz (289.8 kB view hashes)

Uploaded Jun 16, 2021 Source

Built Distributions

pyteomics.cythonize-0.2.4-cp39-cp39-win_amd64.whl (485.3 kB view hashes)

Uploaded Jun 16, 2021 CPython 3.9 Windows x86-64

pyteomics.cythonize-0.2.4-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.5 MB view hashes)

Uploaded Jun 16, 2021 CPython 3.9 manylinux: glibc 2.12+ x86-64 manylinux: glibc 2.5+ x86-64

pyteomics.cythonize-0.2.4-cp38-cp38-win_amd64.whl (485.8 kB view hashes)

Uploaded Jun 16, 2021 CPython 3.8 Windows x86-64

pyteomics.cythonize-0.2.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB view hashes)

Uploaded Jun 16, 2021 CPython 3.8 manylinux: glibc 2.12+ x86-64 manylinux: glibc 2.5+ x86-64

pyteomics.cythonize-0.2.4-cp37-cp37m-win_amd64.whl (479.6 kB view hashes)

Uploaded Jun 16, 2021 CPython 3.7m Windows x86-64

pyteomics.cythonize-0.2.4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.3 MB view hashes)

Uploaded Jun 16, 2021 CPython 3.7m manylinux: glibc 2.12+ x86-64 manylinux: glibc 2.5+ x86-64

pyteomics.cythonize-0.2.4-cp36-cp36m-win_amd64.whl (479.4 kB view hashes)

Uploaded Jun 16, 2021 CPython 3.6m Windows x86-64

pyteomics.cythonize-0.2.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.4 MB view hashes)

Uploaded Jun 16, 2021 CPython 3.6m manylinux: glibc 2.12+ x86-64 manylinux: glibc 2.5+ x86-64

Hashes for pyteomics.cythonize-0.2.4.tar.gz

Hashes for pyteomics.cythonize-0.2.4.tar.gz
Algorithm	Hash digest
SHA256	`fa0bd3e202d92adba1dec14c54427617f78860572e750ebee06059d92ee8281d`
MD5	`fffa2a9e6768a3350068467c1c8d58e5`
BLAKE2b-256	`0451d411399aabb75e1ef5cc53b00a6cfa04108257764b2ff7c8a4a436d1d195`

Hashes for pyteomics.cythonize-0.2.4-cp39-cp39-win_amd64.whl

Hashes for pyteomics.cythonize-0.2.4-cp39-cp39-win_amd64.whl
Algorithm	Hash digest
SHA256	`b48bcdc7f165356845c7114dd89d3c92500e43de1be6c1fb5eb96197e9f89371`
MD5	`3f51749d0fe29c2df1c42735748db46f`
BLAKE2b-256	`f5efc926da80f7d4aa9453c84835ba6a41e7b7b83099b143bfde4e8dbb27bec0`

Hashes for pyteomics.cythonize-0.2.4-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Hashes for pyteomics.cythonize-0.2.4-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm	Hash digest
SHA256	`7362e85a40369917bc024f98cecc2de1b8d78551a1ffa7ec5d6ff7f9a322e619`
MD5	`ba9b1353016475883c39c729e9c18652`
BLAKE2b-256	`37feec3af3f1a0b3299619c0f4120aeba7e6c0de49e23ffa7ec5b0f3452cbfe1`

Hashes for pyteomics.cythonize-0.2.4-cp38-cp38-win_amd64.whl

Hashes for pyteomics.cythonize-0.2.4-cp38-cp38-win_amd64.whl
Algorithm	Hash digest
SHA256	`0f3f5bdeb62c737000d18f190c3ca782c3cc02b8ef77d8558821539fe1ee5934`
MD5	`55031de0474ca641906b9935d8c96051`
BLAKE2b-256	`90ea00444fd73bc45f384063c243da3116d29fe7ee0abe2ca57f833fa333e697`

Hashes for pyteomics.cythonize-0.2.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Hashes for pyteomics.cythonize-0.2.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm	Hash digest
SHA256	`e150775610b47f5029a6cbb1a49ea886cd66534824f377aed56bac643871af4c`
MD5	`5687295b6e135a75eebfce789eb09d6b`
BLAKE2b-256	`2e464df14bc738b4004d8b89c36771208ce3b7eee4bd8eec183eb3a0a7e31424`

Hashes for pyteomics.cythonize-0.2.4-cp37-cp37m-win_amd64.whl

Hashes for pyteomics.cythonize-0.2.4-cp37-cp37m-win_amd64.whl
Algorithm	Hash digest
SHA256	`6d991b0c229da17fb97adf92cd5f33ef907c65e13932a405994e823a9a515d54`
MD5	`745d6a77580db09d6346b9c0e9031d89`
BLAKE2b-256	`81771b4a4a4bddc374bc999c62210c6af087caed4b40a8f2b26301642b7e1b2b`

Hashes for pyteomics.cythonize-0.2.4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Hashes for pyteomics.cythonize-0.2.4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm	Hash digest
SHA256	`db70f8c049cedb6a04cb90cd4f13e42e20b75ba99f860ed761fae26bea7435c1`
MD5	`eacb2a00f4647129f2aabc241d804daf`
BLAKE2b-256	`365e68a7f4742f70a4dfd02add813e642dbe89c23f722bbd2b8b68ba17720503`

Hashes for pyteomics.cythonize-0.2.4-cp36-cp36m-win_amd64.whl

Hashes for pyteomics.cythonize-0.2.4-cp36-cp36m-win_amd64.whl
Algorithm	Hash digest
SHA256	`4d9cfb0be95b3e1612f4bc1e85169cf87d85e8cb76f41f070b827a929a282499`
MD5	`3f66062b0ed4d7021cba0806e91fd3f3`
BLAKE2b-256	`a9ce65ad4f675df4fafcfd5baa8db4f54cda1cc63ad564f6f7ebe8dacd9f8902`

Hashes for pyteomics.cythonize-0.2.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Hashes for pyteomics.cythonize-0.2.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm	Hash digest
SHA256	`ee88f503a828c01a0f328edb2a644c582072a5aacd69fdb97da970c415e9835c`
MD5	`7d3dbb1b4b881025bf5ea3dd6c1881a8`
BLAKE2b-256	`3cd2a24960cc91effeb2a0604b823dea21c86aa03171c8018cb3e140878a52a6`