pyteomics.pepxmltk 0.2.0b1

A utility for creation of pepXML files from Python objects and TandemXML files.

pyteomics.pepxmltk - a pepXML writer and Tandem2XML converter

pyteomics.pepxmltk is a module based on the pyteomics package that allows creation of pepXML files from Python objects of a certain structure. The structure corresponds to tokens generated by the pyteomics TandemXML parser.

This package provides a module that can be used for writing pepXML files from your Python code, as well as a command-line script for conversion, merging or filtering of X!Tandem files to pepXML. Unlike its analog from Trans-Proteomic Pipeline (TPP), the script is capable of handling non-standard enzymes.

Dependencies

• pyteomics

• numpy

• lxml

• jinja2

Links

• PyPI: https://pypi.python.org/pypi/pyteomics.pepxmltk

• BitBucket repo & issue tracker: https://bitbucket.org/markmipt/pyteomics.pepxmltk

• Mailing list: [e-mail]