pytest-datadir-mgr 0.1.0

Manager for test data providing downloads, caching of generated files, and a context for temp directories.

The datadir-mgr plugin for pytest provides the datadir_mgr fixture which allow test functions to easily download data files and cache generated data files in data directories in a manner that allows for overlaying of results. datadir-mgr is pathlib-based, so complete paths to data files are handled, not just filenames.

The datadir_mgr fixture provides four methods of interest:

• The download method allows downloading data files into data directories, with option MD5 checksum checks, un-gzipping, and a progressbar.

• The savepath fixture lets an arbitrary path relative to the current working directory to be saved at a particular scope in the data directories.

• The add_scope method lets one add directories from scopes different from the present request to be added to the search path. This lets the results of previous cached steps to be used in scopes other than global.

• The in_tmp_dir method creates a context in a temporary directory with a list of request file paths copied in. Optionally, all output file paths can be saved at a particular scope at cleanup with an optional exclusion filter pattern (e.g., for excluding log files).

Prerequisites

Python 3.6 or greater is required. This package is tested under Linux and MacOS using Python 3.7.

Installation for Users

Install via pip

pip install pytest-datadir-mgr

For Developers

If you plan to develop bionorm, you’ll need to install the poetry dependency manager. If you haven’t previously installed poetry, execute the command:

curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python

Next, get the master branch from GitHub

git clone https://github.com/ncgr/pytest-datadir-mgr.git

Change to the datadir-mgr/ directory and install with poetry:

poetry install -v

Test datadir-mgr with poetry:

poetry run pytest -s

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