Python Template Matching Engine
Project description
Python Template Matching Engine (PyTME)
A software for template matching on electron microscopy data.
📖 Official Documentation | 🚀 Installation Guide | 📚 API Reference
Installation
There are three ways to get PyTME up and running:
- Install from Source:
pip install git+https://github.com/KosinskiLab/pyTME
- Install from PyPi:
pip install pytme
- Docker Container: Build and use the PyTME container from Docker. This assumes a linux/amd64 platform.
docker build \
-t pytme \
--platform linux/amd64 \
-f docker/Dockerfile \
.
🔗 For more on the Docker container, visit the Docker Hub page.
Publication
The pyTME publication is available on bioRxiv.
@article{Maurer2023.10.23.563472,
author = {Valentin J. Maurer and Marc Siggel and Jan Kosinski},
journal = {bioRxiv},
title = {PyTME (Python Template Matching Engine): A fast, flexible, and multi-purpose template matching library for cryogenic electron microscopy data},
year = {2023}}
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