pytmt returns ms2 tmt quantification values from Crux Percolator output
Project description
pyTMT v0.5.0
pyTMT returns ms2 tandem mass tag quantification values from Crux/Percolator output.
See the Documentations for more information.
Getting Started
Requirements
Install Python 3.7+ and pip. See instructions on Python website for specific instructions for your operating system.
Install pyTMT from PyPI. We recommend using a virtual environment.
$ pip install pytmt
Running
Launch pyTMT as a Python module (Usage/Help)
$ python -m pytmt -h
Console entry point:
$ pytmt
Prerequisites
pyTMT is tested in Python 3.7, and 3.8 and requires the following packages:
pandas>=1.0.4
pymzml==2.5.2
tqdm>=4.46.0
scipy>=1.4.1
Contributing
Please contact us if you wish to contribute, and submit pull requests to us.
Authors
- Edward Lau, PhD - Code/design - ed-lau
- Maggie Lam, PhD - Code/design - Maggie-Lam
License
This project is licensed under the MIT License - see the LICENSE file for details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file pytmt-0.5.0.tar.gz.
File metadata
- Download URL: pytmt-0.5.0.tar.gz
- Upload date:
- Size: 8.2 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/34.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.9 tqdm/4.62.1 importlib-metadata/4.11.3 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.16
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 079bf50974dae67540194c1d3e425749604f0c0079db10f6f8bd00cd9c92404d |
|
| MD5 | aac709244cf5d91867d9f1278f3cc5d9 |
|
| BLAKE2b-256 | 26157f6486f414b743a88a1c462f35338e172cd6d95ae97af6145f67d152d373 |
