pytmt returns ms2 tmt quantification values from Crux Percolator output
Project description
PyTMT returns ms2 tandem mass tag quantification values from Crux/Percolator output.
Getting Started
Requirements
Install Python 3.6+ and pip. See instructions on Python website for specific instructions for your operating system.
Install pytmt from PyPI. We recommend using a virtual environment.
$ pip install pytmt
Running
Launch pytmt as a Python module (Usage/Help)
$ python -m pytmt
Console entry point:
$ pytmt
Example command:
$ python -m pytmt /path/to/mzml/ /path/to/percolator/ -o /path/to/output/
Prerequisites
pytmt is tested in Python 3.6, 3.7, and 3.8 and requires the following packages:
pandas>=1.0.4
pymzml==2.4.6
tqdm>=4.46.0
Contributing
Please contact us if you wish to contribute, and submit pull requests to us.
Authors
- Edward Lau, PhD - Code/design - ed-lau
- Maggie Lam, PhD - Code/design - Maggie-Lam
License
This project is licensed under the MIT License - see the LICENSE file for details
Project details
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