Skip to main content

VCF annotation

Project description

# PyAnnotate Package for annotation of genomic variant files

https://github.com/ionox0/pyannotate https://pypi.org/project/pyvcfannotate/

### Responsibilities - Extract relevant details from VCF records - Merge records with variant info from EXAC API - Write output to MAF format

### Usage: - pip install pyvcfannotate - pyannotate –vcf_path variants.vcf

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyvcfannotate-0.1.2.tar.gz (4.2 kB view details)

Uploaded Source

Built Distribution

pyvcfannotate-0.1.2-py3-none-any.whl (4.9 kB view details)

Uploaded Python 3

File details

Details for the file pyvcfannotate-0.1.2.tar.gz.

File metadata

  • Download URL: pyvcfannotate-0.1.2.tar.gz
  • Upload date:
  • Size: 4.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.0.0 pkginfo/1.5.0.1 requests/2.26.0 setuptools/45.2.0.post20200210 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.7.6

File hashes

Hashes for pyvcfannotate-0.1.2.tar.gz
Algorithm Hash digest
SHA256 cbe82eb2160356d1cf05ff8386b96eb4fed15b71910583a2cab72d06a3ac3a45
MD5 5df6090be9394c1e750ab3dfd65be532
BLAKE2b-256 e19530cf705bfdfa8ae3f50393c95855e0ed5a45cb28a8384c27a0fcd3bbf834

See more details on using hashes here.

File details

Details for the file pyvcfannotate-0.1.2-py3-none-any.whl.

File metadata

  • Download URL: pyvcfannotate-0.1.2-py3-none-any.whl
  • Upload date:
  • Size: 4.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.0.0 pkginfo/1.5.0.1 requests/2.26.0 setuptools/45.2.0.post20200210 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.7.6

File hashes

Hashes for pyvcfannotate-0.1.2-py3-none-any.whl
Algorithm Hash digest
SHA256 20d9c2c2d991c65916be801fd305f3509cf6f79112dfbf0faee1937e9f1f6dfc
MD5 6d443fabb28571e5b7d56c6e89fe62c7
BLAKE2b-256 7d2321aef545a7c3c944a90c88f3d21f66c0d7ecff553d792487721ce6222675

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page