JQ-ish tool to query/munge JSON files using Python
Project description
qpyson: Thin Commandline Tool to Explore, Transform, and Munge JSON using Python
The JSON querying tool, jq, is a really powerful tool. However, it’s sometimes a bit involved and has a learning curve that requires digging into the jq manual and familiarizing yourself with a custom language.
qpyson is a thin commandline tool to explore, transform, or munge JSON
using Python as the processing language.
Goals
- Process (filter, map, general munging) of JSON files using Python
- Thin layer to process or apply transforms written in Python
- Provide Python function as a string to the commandline or define Python functions in an external file
- Custom functions can be parameterized and configured from the commandline
- Output results are emitted as JSON or in tabular form (using tabulate for quick viewing from the commandline
Non-Goals
- A replacement for
jq - No custom DSL for filtering or querying (use Python directly)
- Does not support streaming (JSON files are loaded into memory)
Installation
Recommended to install using a virtualenv or conda env to install.
pip install qpyson
Quick Tour
Example data from the Iris dataset.
head examples/iris.json
[
{"sepalLength": 5.1, "sepalWidth": 3.5, "petalLength": 1.4, "petalWidth": 0.2, "species": "setosa"},
{"sepalLength": 4.9, "sepalWidth": 3.0, "petalLength": 1.4, "petalWidth": 0.2, "species": "setosa"},
{"sepalLength": 4.7, "sepalWidth": 3.2, "petalLength": 1.3, "petalWidth": 0.2, "species": "setosa"},
{"sepalLength": 4.6, "sepalWidth": 3.1, "petalLength": 1.5, "petalWidth": 0.2, "species": "setosa"},
{"sepalLength": 5.0, "sepalWidth": 3.6, "petalLength": 1.4, "petalWidth": 0.2, "species": "setosa"},
{"sepalLength": 5.4, "sepalWidth": 3.9, "petalLength": 1.7, "petalWidth": 0.4, "species": "setosa"},
{"sepalLength": 4.6, "sepalWidth": 3.4, "petalLength": 1.4, "petalWidth": 0.3, "species": "setosa"},
{"sepalLength": 5.0, "sepalWidth": 3.4, "petalLength": 1.5, "petalWidth": 0.2, "species": "setosa"},
{"sepalLength": 4.4, "sepalWidth": 2.9, "petalLength": 1.4, "petalWidth": 0.2, "species": "setosa"},
The commandline tool takes a function written as commandline string or referenced in an external file as well as the JSON file to be processed.
qpyson --help
qpyson: error: the following arguments are required: path_or_cmd, json_file
usage: qpyson [-f FUNCTION_NAME] [-n] [--indent INDENT] [-t]
[--table-style TABLE_STYLE]
[--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}]
[--help]
path_or_cmd json_file
Util to use Python to process (e.g., filter, map) JSON files
positional arguments:
path_or_cmd Path to python file, or python cmd
json_file Path to JSON file
optional arguments:
-f FUNCTION_NAME, --function-name FUNCTION_NAME
Function name (default: f)
-n, --no-pretty (Non-table) Pretty print the output of dicts and list
of dicts (default: False)
--indent INDENT (Non-table) Pretty print indent spacing (default: 2)
-t, --print-table Pretty print results (default: False)
--table-style TABLE_STYLE
Table fmt style using Tabulate. See
https://github.com/astanin/python-tabulate#table-
format for available options (default: simple)
--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}
Log level (default: NOTSET)
--help Show this help message and exit (default: False)
We can define a custom function to process the JSON dataset. By default
the function is named f and can be customized by -f or
--function-name commandline argument.
qpyson "def f(d): return d[0]" examples/iris.json
{
"sepalLength": 5.1,
"sepalWidth": 3.5,
"petalLength": 1.4,
"petalWidth": 0.2,
"species": "setosa"
}
We can also write custom functions in a Python file.
cat examples/iris_explore.py
def f(d):
return d[0]
def f2(d, max_items: int = 10):
return d[:max_items]
def f3(d, max_items: int = 5):
return [x for x in d if x["species"] == "setosa"][:max_items]
def f4(d, sort_field: str, sort_direction: str = "asc", max_items: int = 5):
reverse = not (sort_direction == "asc")
d.sort(key=lambda x: x[sort_field], reverse=reverse)
return d[:max_items]
def f0(d):
# Identity operator
return d
def first(d):
return d[0]
def p(d, field: str = "sepalLength"):
import pandas as pd
df = pd.DataFrame.from_dict(d)
sdf = df.describe()
return sdf.to_dict()[field]
Executing --help will show the output options.
qpyson examples/iris_explore.py examples/iris.json --help
usage: qpyson [-f FUNCTION_NAME] [-n] [--indent INDENT] [-t]
[--table-style TABLE_STYLE]
[--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}]
[--help]
path_or_cmd json_file
Util to use Python to process (e.g., filter, map) JSON files
positional arguments:
path_or_cmd Path to python file, or python cmd
json_file Path to JSON file
optional arguments:
-f FUNCTION_NAME, --function-name FUNCTION_NAME
Function name (default: f)
-n, --no-pretty (Non-table) Pretty print the output of dicts and list
of dicts (default: False)
--indent INDENT (Non-table) Pretty print indent spacing (default: 2)
-t, --print-table Pretty print results (default: False)
--table-style TABLE_STYLE
Table fmt style using Tabulate. See
https://github.com/astanin/python-tabulate#table-
format for available options (default: simple)
--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}
Log level (default: NOTSET)
--help Show this help message and exit (default: False)
Executing function f, yields:
qpyson examples/iris_explore.py examples/iris.json
{
"sepalLength": 5.1,
"sepalWidth": 3.5,
"petalLength": 1.4,
"petalWidth": 0.2,
"species": "setosa"
}
The output view can be changed to a table view using --print-table or
-t.
qpyson examples/iris_explore.py examples/iris.json --print-table --table-style github
| sepalLength | sepalWidth | petalLength | petalWidth | species |
|---------------|--------------|---------------|--------------|-----------|
| 5.1 | 3.5 | 1.4 | 0.2 | setosa |
A better example using function f2 defined in iris_explore.py
qpyson examples/iris_explore.py examples/iris.json --function-name f2 --print-table
sepalLength sepalWidth petalLength petalWidth species
------------- ------------ ------------- ------------ ---------
5.1 3.5 1.4 0.2 setosa
4.9 3 1.4 0.2 setosa
4.7 3.2 1.3 0.2 setosa
4.6 3.1 1.5 0.2 setosa
5 3.6 1.4 0.2 setosa
5.4 3.9 1.7 0.4 setosa
4.6 3.4 1.4 0.3 setosa
5 3.4 1.5 0.2 setosa
4.4 2.9 1.4 0.2 setosa
4.9 3.1 1.5 0.1 setosa
Custom functions can be defined with required or optional values (with defaults) combined with Python 3 type annotations to generate
cat examples/iris.py
# More examples that demonstrate generating commandline arguments
def f(d, sort_field: str, sort_direction: str = "asc", max_items: int = 5):
reverse = not (sort_direction == "asc")
d.sort(key=lambda x: x[sort_field], reverse=reverse)
return d[:max_items]
def g(d, field: str = "sepalLength"):
import pandas as pd
df = pd.DataFrame.from_dict(d)
sdf = df.describe()
return sdf.to_dict()[field]
And calling --help will show the custom function specific arguments
(e.g., --max_items and --sort_direction)
qpyson examples/iris.py examples/iris.json --help
usage: qpyson [-f FUNCTION_NAME] [-n] [--indent INDENT] [-t]
[--table-style TABLE_STYLE]
[--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}]
[--help] [--sort_field SORT_FIELD]
[--sort_direction SORT_DIRECTION] [--max_items MAX_ITEMS]
path_or_cmd json_file
Util to use Python to process (e.g., filter, map) JSON files
positional arguments:
path_or_cmd Path to python file, or python cmd
json_file Path to JSON file
optional arguments:
-f FUNCTION_NAME, --function-name FUNCTION_NAME
Function name (default: f)
-n, --no-pretty (Non-table) Pretty print the output of dicts and list
of dicts (default: False)
--indent INDENT (Non-table) Pretty print indent spacing (default: 2)
-t, --print-table Pretty print results (default: False)
--table-style TABLE_STYLE
Table fmt style using Tabulate. See
https://github.com/astanin/python-tabulate#table-
format for available options (default: simple)
--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}
Log level (default: NOTSET)
--help Show this help message and exit (default: False)
--sort_field SORT_FIELD
sort_field type:<class 'str'> from custom func `f`
(default: _empty)
--sort_direction SORT_DIRECTION
sort_direction type:<class 'str'> from custom func `f`
(default: asc)
--max_items MAX_ITEMS
max_items type:<class 'int'> from custom func `f`
(default: 5)
And calling with custom options yields:
qpyson examples/iris.py examples/iris.json -t --max_items=3 --sort_direction=desc --sort_field sepalLength
sepalLength sepalWidth petalLength petalWidth species
------------- ------------ ------------- ------------ ---------
7.9 3.8 6.4 2 virginica
7.7 3.8 6.7 2.2 virginica
7.7 2.6 6.9 2.3 virginica
Another Example calling pandas underneath the hood to get a quick summary of the data.
qpyson examples/iris.py examples/iris.json -t -f g --field=sepalLength
count mean std min 25% 50% 75% max
------- ------- -------- ----- ----- ----- ----- -----
150 5.84333 0.828066 4.3 5.1 5.8 6.4 7.9
It’s also possible to create thin JSON munging tools for configuration of systems or tools that take JSON as input.
For example a JSON configuration template with defaults.
cat examples/config_template.json
{
"alpha": 1234,
"beta": null,
"gamma": 90.1234
}
And a processing function, f.
cat examples/config_processor.py
def f(dx, alpha: float, beta: float, gamma: float):
"""Simple example of config munging"""
def _set(k, v):
if v:
dx[k] = v
items = [("alpha", alpha), ("beta", beta), ("gamma", gamma)]
for name, value in items:
_set(name, value)
dx["_comment"] = "Configured with qpyson"
return dx
Running --help will show the supported configuration options.
qpyson examples/config_processor.py examples/config_template.json --help
usage: qpyson [-f FUNCTION_NAME] [-n] [--indent INDENT] [-t]
[--table-style TABLE_STYLE]
[--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}]
[--help] [--alpha ALPHA] [--beta BETA] [--gamma GAMMA]
path_or_cmd json_file
Util to use Python to process (e.g., filter, map) JSON files
positional arguments:
path_or_cmd Path to python file, or python cmd
json_file Path to JSON file
optional arguments:
-f FUNCTION_NAME, --function-name FUNCTION_NAME
Function name (default: f)
-n, --no-pretty (Non-table) Pretty print the output of dicts and list
of dicts (default: False)
--indent INDENT (Non-table) Pretty print indent spacing (default: 2)
-t, --print-table Pretty print results (default: False)
--table-style TABLE_STYLE
Table fmt style using Tabulate. See
https://github.com/astanin/python-tabulate#table-
format for available options (default: simple)
--log-level {CRITICAL,ERROR,WARNING,INFO,DEBUG,NOTSET}
Log level (default: NOTSET)
--help Show this help message and exit (default: False)
--alpha ALPHA alpha type:<class 'float'> from custom func `f`
(default: _empty)
--beta BETA beta type:<class 'float'> from custom func `f`
(default: _empty)
--gamma GAMMA gamma type:<class 'float'> from custom func `f`
(default: _empty)
Now configuring alpha, beta and gamma.
qpyson examples/config_processor.py examples/config_template.json --alpha 1.23 --beta 2.34 --gamma 3.45
{
"alpha": 1.23,
"beta": 2.34,
"gamma": 3.45,
"_comment": "Configured with qpyson"
}
Testing
Testing is currently done using RMarkdown using the make target doc.
This should probably be ported to non-R based approach. However, this current approach does keep the docs (e.g., README.md) up to date.
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