Tool for query and parsing the phenomizer tool
Project description
query_phenomizer
A small module for querying the phenomizer tool with HPO-terms.
INFO!!!
From 16/2-16 phenomizer demands a password and username when using the service in this way. Request login credentials from sebastian.koehler@charite.de
Installation
pip install query_phenomizer
or
git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .
##Usage##
query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt
User can check if hpo terms exist by using the flag -c/--check_terms.
query_phenomizer HP:0001623 HP:02345555 --check_terms -v
Prints that HP:02345555 does not exist.
For more info run
query_phenomizer --help
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file query_phenomizer-1.2.1.tar.gz.
File metadata
- Download URL: query_phenomizer-1.2.1.tar.gz
- Upload date:
- Size: 7.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.11.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | fe673970e435bf49fd4d7f14283d8f4e11546fca597a39abf8ca87158da9ca20 |
|
| MD5 | d8eadf494af580835e365286042ee5fd |
|
| BLAKE2b-256 | 02210e62f38dcf337727a4d3b7d18dc55b090296f43ac95a070c2dbe3e5ef24f |
File details
Details for the file query_phenomizer-1.2.1-py2.py3-none-any.whl.
File metadata
- Download URL: query_phenomizer-1.2.1-py2.py3-none-any.whl
- Upload date:
- Size: 7.1 kB
- Tags: Python 2, Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.11.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 403d66f71c1cb345f61d52865637a91ac1348b7929422c0feb1fff32f163e11d |
|
| MD5 | fe447d5dfa436f60d80827e6b107967f |
|
| BLAKE2b-256 | d679408132ee652fa18b47d2b3252e0980d5b231b3397fc7397a40dfec2b91a2 |
