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Tool for query and parsing the phenomizer tool

Project description

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# query_phenomizer #

A small module for querying the [phenomizer tool]( with HPO-terms.

# INFO!!! #

From 16/2-16 phenomizer demands a password and username when using the service in this way.
Request login credentials from

## Installation ##

pip install query_phenomizer

git clone
cd query_phenomizer
pip install --editable .

query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt

User can check if hpo terms exist by using the flag ```-c/--check_terms```.

query_phenomizer HP:0001623 HP:02345555 --check_terms -v

Prints that HP:02345555 does not exist.

For more info run

query_phenomizer --help

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