Skip to main content

Tool for query and parsing the phenomizer tool

Project description

[![Build Status](https://travis-ci.org/moonso/query_phenomizer.svg)](https://travis-ci.org/moonso/query_phenomizer)
# query_phenomizer #

A small module for querying the [phenomizer tool](http://compbio.charite.de/phenomizer/) with HPO-terms.

# INFO!!! #

From 16/2-16 phenomizer demands a password and username when using the service in this way.
Request login credentials from sebastian.koehler@charite.de

## Installation ##

pip install query_phenomizer

or
```
git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .
```
##Usage##

query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt

User can check if hpo terms exist by using the flag ```-c/--check_terms```.

query_phenomizer HP:0001623 HP:02345555 --check_terms -v

Prints that HP:02345555 does not exist.

For more info run

query_phenomizer --help

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for query_phenomizer, version 1.2
Filename, size File type Python version Upload date Hashes
Filename, size query_phenomizer-1.2-py2.py3-none-any.whl (7.6 kB) File type Wheel Python version 3.6 Upload date Hashes View hashes
Filename, size query_phenomizer-1.2.tar.gz (6.9 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page