query-phenomizer 0.5

Tool for query and parsing the phenomizer tool

[](https://travis-ci.org/moonso/query_phenomizer)
# query_phenomizer #

A small module for querying the [phenomizer tool](http://compbio.charite.de/phenomizer/) with HPO-terms.

# INFO!!! #

From 16/2-16 phenomizer demands a password and username when using the service in this way.
Request login credentials from [e-mail]

## Installation ##

pip install query_phenomizer

or
```
git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .
```
##Usage##

query_phenomizer --hpo_term HP:0001623 --hpo_term HP:0002465 --output genes.txt -u USERNAME -p PASSWORD

User can check if hpo terms exist by using the flag ```-c/--check_terms```.

query_phenomizer --hpo_term HP:0001623 --hpo_term HP:02345555 --output genes.txt --check_terms -v -u USERNAME -p PASSWORD

Prints that HP:02345555 does not exist.

For more info run

query_phenomizer --help