A GUI for r2g, which is a homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Reads to Genes (r2g) GUI
This is the GUI wrapper for Reads to Genes, or r2g, which is a homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly. The r2g core is hosted on https://github.com/yangwu91/r2g.
r2g GUI is still under developing, please feel free to file an issue or email me.
Please follow the instruction here to download and install Docker based on your operating system before running the
r2g GUI. The Docker software is compatible with most common operating systems including Linux, macOS and Windows.
You can choose one of the following methods to install the
Download zipped pre-built binary files (Python 3 environment is NOT required)
Operating System Size (Mb) MD5 Download link Windows 40.58 6ce77067905cb0d7e5c17934a018da76 r2g_gui-0.1.0-Windows.zip macOS 30.10 f719b82ba47e74b758a2505aecb4c5ad r2g_gui-0.1.0-macOS.zip
⚠️ Please note that Windows Defender will report it as
Trojan:Win32/Wacatac.B!ml, which is false positive. Add the
r2g.exeto the excluding list of Windows Defender for further use. Please check out the scanning results on https://virustotal.com. Or maybe you can try the other method if the Python 3 environment has been installed on your computer.
Install by PyPI (Python 3 environment is required)
If Python 3 and the
piputility has been installed on your computer, the
r2g GUIcan be installed by the command as follows:
pip install r2g_gui
Please run the Docker (i.e. Docker Desktop on WIndows/macOS or Docker Deamon on Linux) before start the r2g job.
r2g GUI. At the first time, the r2g GUI will pull the latest image of the r2g Docker, which should take a while depending on your network quality.
r2g_gui-*.*.*-Windows.zip, and then double click
r2g.app, or right click
r2g.app, then click
Other systems with Python 3 environment (installed by PyPI)
r2g.gui.pyin the terminal should call the
Fill in the parameters and hit the
Start!button to submit the job. In addition, here is an example configuration. To use it, please click
Import parameters...and then select it, the GUI wrapper will load pre-configured parameters automatically. Hit the
Start!button and enjoy!
r2g GUI is the GUI wrapper for the
r2g, please check out the detailed usage of
r2g to tweak parameters.
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
|Filename, size||File type||Python version||Upload date||Hashes|
|Filename, size r2g_gui-0.1.0-py3-none-any.whl (526.2 kB)||File type Wheel||Python version py3||Upload date||Hashes View|
|Filename, size r2g_gui-0.1.0.tar.gz (525.9 kB)||File type Source||Python version None||Upload date||Hashes View|