RNASeq Age Calculation in Python
Project description
racpy
RNASeq Age Calculation in Python
Free software: MIT license
Documentation: https://racpy.readthedocs.io.
Features
This is the Python verion of our proposed multi-tissue transcriptional age calculator.
The RNAAgeCalc paper can be found here https://doi.org/10.1371/journal.pone.0237006.
The Python package can be found here https://pypi.org/project/racpy.
The Python package documentation can be found here https://racpy.readthedocs.io.
An interactive Shiny App can be found here https://xuren2120.shinyapps.io/RNAAgeCalcshiny/.
The Shiny App demo can be found here http://www.ams.sunysb.edu/~pfkuan/RNAAgeCalc/instructions.html.
The R version can be found here https://bioconductor.org/packages/release/bioc/html/RNAAgeCalc.html.
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
Dependencies scanned by PyUp.io
Citation
Ren, X., & Kuan, P. F. (2020). RNAAgeCalc: A multi-tissue transcriptional age calculator. PloS one, 15(8), e0237006.
History
0.1.6 (2020-09-20)
Added citation
0.1.5 (2020-06-24)
Replaced “DESeq” with “DESeq2” throughout the package
0.1.4 (2020-06-10)
Updated requirements_dev.txt
0.1.3 (2020-04-24)
Included extra credits in README
0.1.2 (2020-02-18)
Bug fixes.
0.1.0 (2020-02-09)
Package created. First release on PyPI.
Project details
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