racpy 0.1.6

RNASeq Age Calculation in Python

racpy

RNASeq Age Calculation in Python

• Free software: MIT license

• Documentation: https://racpy.readthedocs.io.

Features

This is the Python verion of our proposed multi-tissue transcriptional age calculator.

• The RNAAgeCalc paper can be found here https://doi.org/10.1371/journal.pone.0237006.

• The Python package can be found here https://pypi.org/project/racpy.

• The Python package documentation can be found here https://racpy.readthedocs.io.

• An interactive Shiny App can be found here https://xuren2120.shinyapps.io/RNAAgeCalcshiny/.

• The Shiny App demo can be found here http://www.ams.sunysb.edu/~pfkuan/RNAAgeCalc/instructions.html.

• The R version can be found here https://bioconductor.org/packages/release/bioc/html/RNAAgeCalc.html.

Authors

• Xu Ren <[e-mail]>

• Pei Fen Kuan <[e-mail]>

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

Dependencies scanned by PyUp.io

Citation

Ren, X., & Kuan, P. F. (2020). RNAAgeCalc: A multi-tissue transcriptional age calculator. PloS one, 15(8), e0237006.

@article{ren2020rnaagecalc,

title={RNAAgeCalc: A multi-tissue transcriptional age calculator},

author={Ren, Xu and Kuan, Pei-Fen},

journal={PLOS ONE},

volume={15},

number={8},

pages={1-21},

year={2020},

publisher={Public Library of Science}

}

History

0.1.6 (2020-09-20)

• Added citation

0.1.5 (2020-06-24)

• Replaced “DESeq” with “DESeq2” throughout the package

0.1.4 (2020-06-10)

• Updated requirements_dev.txt

0.1.3 (2020-04-24)

• Included extra credits in README

0.1.2 (2020-02-18)

• Bug fixes.

0.1.0 (2020-02-09)

• Package created. First release on PyPI.