Automatically crops mice and quantifies their tumor luminescences from raw IVIS images
Project description
A image processing pipeline to automatically crop and quantify tumor burdens (radiance) in mice treated with bioluminescent tumors.
Intutitive processing of quantitative radiance data and raw mouse images is supported through a user friendly GUI interface.
Main powerpoint tutorial for GUI is hosted on google drive: https://drive.google.com/drive/folders/1uMwXMndPof3gsGh2eiZvHXkv-mX3mg3h?usp=sharing
To use this package:
- If anaconda is not installed, follow installation instructions here: https://docs.anaconda.com/anaconda/install/
- Start terminal, type in and enter:
conda activate
- Now install radianceQuantifier via PyPi by typing the following line in the terminal:
pip install radianceQuantifier
- In this anaconda environment, type:
python3 -m radianceQuantifier
to start the program
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