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Command line browser for RCSB database

Project Description


A command line browser for RCSB data bank: you can either query the database for
keywords or download when ID is known. This version only downloads the pdb file
in tar.gz file.


$ rcsb_browser --query adenine in human by Hurley and Parajuli

Total 1 results are fetched
INFO: Storing custom report: /home/dilawar/Work/GITHUB/rcsb_browser

structureId : 4L2O
structureTitle : Crystal structure of human ALDH3A1 with its selective inhibitor 1-(4-fluorophenyl)sulfonyl-2-methylbenzimidazole
experimentalTechnique : X-RAY DIFFRACTION
depositionDate : 2013-06-04
releaseDate : 2014-01-29
ndbId : null
resolution : 1.94
structureAuthor : Hurley, T.D., Parajuli, B.
classification : OXIDOREDUCTASE/Inhibitor
structureMolecularWeight : 213310.03
macromoleculeType : Protein

In this example, only one result is fetched but if query is short then you might
end up getting thousands for results (though it will never print more than 100
results onto the console). A file in XML format is also saved which you can open
in some office-suite to see.

Once ID is known (e.g. 4l20 in this case), you can download the pdb file, by
using the --fetch (or -f) command.

$ rcsb_browser --fetch 4l20

It will download and store the file in current working directory.

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This version
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Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
rcsb_browser-0.0.1.tar.gz (4.3 kB) Copy SHA256 hash SHA256 Source None Aug 30, 2014

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