Skip to main content

Python client for Reactome content and analysis service API calls.

Project description

Reactome2py

CI Branch Build Status
Travis master Build Status

reactome2py from PyPISupported Python Versions Anaconda-Server Badge

Python client for Reactome content and analysis services API calls.

Installation

  • PyPI install using pip

    (sudo) pip install reactome2py 
    
  • from source

    git clone repo
    cd reactome2py
    python setup.py install 
    
  • Dockerfile

    (sudo) docker build -t <tag-name>:latest .
    (sudo) docker run -it --rm <tag-name>:latest
    

reactome2py Jupyter notebook use-case examples

demo folder holds jupyter notebooks to show use-cases:

API Documentation and json structures (Model section)

Reactome Pathway Browser Tour

This video is useful in understanding how to fully use and interpret Reactome pathway browser features.
https://www.youtube.com/watch?v=-skixrvI4nU

In depth user guides are available at: https://reactome.org/userguide

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Built Distribution

reactome2py-1.0.1-py3-none-any.whl (24.2 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page