A Python module for loading lif file as numpy array
Load 3D confocal images from
lif files as
The code was originally written by Mathieu Leocmach in package colloids.
- The most convenient way would be:
pip install read_lif
- You can also Include the file
read_lifin your project directory
How to Use It
import read_lif reader = read_lif.Reader('lif_file.lif') series = reader.getSeries() chosen = series # choose first image in the lif file # get a numpy array corresponding to the 1st time point & 1st channel # the shape is (z, y, x) image = chosen.getFrame(T=0, channel=0)
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