RefChef
RefChef is a reference management tool used to (1) document the exact steps undertaken in the retrieval of genomic references, (2) maintain the associated metadata, (3) provide a mechanism for automatically reproducing retrieval and creation of an exact copy of genomic references.
Installation
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file is included in .gitignore intentionally, so that it is never committed. - Create a .env file and copy into it the contents of .env.template - Get your GitHub Access Token and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen to ensure that commit messages remain well-formatted and consistent across different contributors.
Before committing for the first time, install commitizen and read Conventional Commits.
pip install commitizen
To start work on a new change, pull the latest develop and create a new topic branch (e.g. feature-resume-model, chore-test-update, bugfix-bad-bug).
git add .
To commit, run the following command (instead of git commit) and follow the directions:
cz commit
Contact
Contact cbc-help@brown.edu - this is our general help line, so please specify that your issue is with this site’s contents
1 maintainer
Metadata
1 maintainer
Release files for refchef 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| refchef-1.0.1.tar.gz | 12.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| refchef-1.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 41.5 kB
Release files / refchef-1.0.1.tar.gz
| Download URL | refchef-1.0.1.tar.gz |
|---|---|
| Size | 12.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.35.0 CPython/3.6.7
|
Release files / refchef-1.0.1-py3-none-any.whl
| Download URL | refchef-1.0.1-py3-none-any.whl |
|---|---|
| Size | 29.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.35.0 CPython/3.6.7
|
