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Tools to help choosing a reference assembly.

Project description

https://img.shields.io/pypi/v/refchooser.svg

Tools to help choose a reference from a list of assemblies.

The refchooser project was developed by the United States Food and Drug Administration, Center for Food Safety and Applied Nutrition.

Features

  • Print list of assemblies sorted by average Mash distance to all other assemblies.

  • Print list of assemblies sorted by number of contigs.

Citing refchooser

To cite refchooser, please reference the refchooser GitHub repository:

https://github.com/CFSAN-Biostatistics/refchooser

License

See the LICENSE file included in the refchooser distribution.

History

0.1.0 (2019-06-21)

  • Initial version.

Project details


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Source Distribution

refchooser-0.1.0.tar.gz (19.2 kB view hashes)

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