Tools to help choosing a reference assembly.
Project description
Tools to help choose a reference from a list of assemblies.
The refchooser project was developed by the United States Food and Drug Administration, Center for Food Safety and Applied Nutrition.
Free software
Documentation: https://refchooser.readthedocs.io
Source Code: https://github.com/CFSAN-Biostatistics/refchooser
PyPI Distribution: https://pypi.python.org/pypi/refchooser
Features
Print list of assemblies sorted by average Mash distance to all other assemblies.
Print list of assemblies sorted by number of contigs.
Citing refchooser
To cite refchooser, please reference the refchooser GitHub repository:
License
See the LICENSE file included in the refchooser distribution.
History
0.1.0 (2019-06-21)
Initial version.
Project details
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