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Tools to help choosing a reference assembly.

Project description

Tools to help choose a reference from a list of assemblies.

The refchooser project was developed by the United States Food and Drug Administration, Center for Food Safety and Applied Nutrition.


  • Print list of assemblies sorted by average Mash distance to all other assemblies.

  • Print list of assemblies sorted by number of contigs.

Citing refchooser

To cite refchooser, please reference the refchooser GitHub repository:


See the LICENSE file included in the refchooser distribution.


0.1.0 (2019-06-21)

  • Initial version.

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refchooser-0.1.0.tar.gz (19.2 kB view hashes)

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