Bioinformatics Reference Data Manager is an application used to download, backup and update of reference data, required for various bioinformatics analysis
Project description
Copyright (c) 2018 Government of Canada
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Description: # Bioinformatics Reference Data Manager (BRDM)
## Description BRDM is an application used to download, backup and update of reference data, required for bioinformatic analysis.
## Requirements
python 3.5
conda
## Deployment Procedures
Download the latest release of this project from https://github.com/AAFC-BICoE/reference-data-manager OR check out this project by clone the git repository. > git clone https://github.com/AAFC-BICoE/reference-data-manager.git
Set up the conda environment for the program > cd reference-data-manager
> conda env create -n rdm_env –file rdn_env_setting.yaml
## Run the program
Copy the sample configuration and modify the config.yaml file > cp brdm/config.yaml.sample brdm/config.yaml
View the options of the program > source activate rdm_env
> python main.py -h
Run the program > source activate rdm_env
> python main.py [option] (an example: python main.py –update-ncbi-blast)
Platform: UNKNOWN
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