A toolbox to work with R projects on Renku
Renku-r-tools is a small python package that provides a CLI to setup R projects on Renku.
- Link the packrat libraries of a R project to another location. This is useful when packrat libraries are located on the docker image.
The latest release is available on PyPI and can be installed using pip:
$ pip install renku-r-tools
Isolated environments using pipx
Install and execute renku-r-tools in an isolated environment using pipx.
Install pipx and make sure that the $PATH is correctly configured.
$ python3 -m pip install --user pipx $ pipx ensurepath
Once pipx is installed use following command to install renku-r-tools.
$ pipx install renku-r-tools $ which renku-r-tools ~/.local/bin/renku-r-tools
Usage: renku-r ln-packrat-lib [OPTIONS] Link packrat libraries to another location. Options: -p, --proj_dir TEXT R project main directory path. Use absolute path. [required] -s, --source TEXT Main directory path of the new packrat libraries source. Use absolute path. [default: /home/rstudio/packrat; required] --help Show this message and exit.
$ renku-r ln_packrat_lib -p <your_R_project_main_directory_path> -s <your_new_packrat_library_path>
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