A toolbox to work with R projects on Renku
Project description
Renku-r-tools is a small python package that provides a CLI to setup R projects on Renku.
Features:
Link the packrat libraries of a R project to another location. This is particularly useful when packrat libraries are located on the docker image.
Installation
The latest release is available on PyPI and can be installed using pip:
$ pip install renku-r-tools
Isolated environments using pipx
Install and execute renku-r-tools in an isolated environment using pipx.
Install pipx and make sure that the $PATH is correctly configured.
$ python3 -m pip install --user pipx $ pipx ensurepath
Once pipx is installed use following command to install renku-r-tools.
$ pipx install renku-r-tools $ which renku-r-tools ~/.local/bin/renku-r-tools
Usage
renku-r ln_packrat_lib
Usage: renku-r ln-packrat-lib [OPTIONS] Link packrat libraries to another location. Options: -p, --proj_dir TEXT R project main directory path. Use absolute path. [required] -s, --source TEXT Main directory path of the new packrat libraries source. Use absolute path. [default: /home/rstudio/packrat; required] --help Show this message and exit.
Example:
$ renku-r ln_packrat_lib -p <your_R_project_main_directory_path> -s <your_new_packrat_library_path>
Project details
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