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Project Description

Resolwe SDK for Python supports interaction with Resolwe server and its extension Resolwe Bioinformatics. You can use it to upload and inspect biomedical data sets, contribute annotations, run analysis, and write pipelines.

Docs & Help

Read the detailed description in documentation.

Install

Install from PyPI:

pip install resdk

If you would like to contribute to the SDK codebase, follow the installation steps for developers.

Quick Start

In this showcase we will download the aligned reads and their index (BAM and BAI) from the server:

import resdk

# Create a Resolwe object to interact with the server
res = resdk.Resolwe('admin', 'admin', 'https://torta.bcm.genialis.com')

# Print command details to stdout
resdk.start_logging()

# Get sample meta-data from the server
sample = res.sample.get('human-example-chr22')

# Download files associated with the sample
sample.download()

Both files (BAM and BAI) have downloaded to the working directory. Check them out. To learn more about the Resolwe SDK continue with Getting started.

If you do not have access to the Resolwe server, contact us at info@genialis.com.

Release History

Release History

1.8.2

This version

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1.8.1

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1.8.0

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1.7.0

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1.6.4

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1.6.3

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1.6.2

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1.6.1

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1.6.0

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1.5.2

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1.5.1

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TODO: Figure out how to actually get changelog content.

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1.5.0

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TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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1.4.0

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1.3.7

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1.3.6

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1.3.5

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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1.3.4

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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1.3.3

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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1.3.2

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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1.3.1

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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1.3.0

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
resdk-1.8.2-py2.py3-none-any.whl (52.1 kB) Copy SHA256 Checksum SHA256 py2.py3 Wheel May 22, 2017
resdk-1.8.2.tar.gz (302.6 kB) Copy SHA256 Checksum SHA256 Source May 22, 2017

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