Skip to main content

Resolwe SDK for Python

Project description

Build Status Build (End-to-End) Status Coverage Status Documentation Status Version on PyPI Supported Python versions

Resolwe SDK for Python supports interaction with Resolwe server and its extension Resolwe Bioinformatics. You can use it to upload and inspect biomedical data sets, contribute annotations, run analysis, and write pipelines.

Docs & Help

Read the detailed description in documentation.

Install

Install from PyPI:

pip install resdk

If you would like to contribute to the SDK codebase, follow the installation steps for developers.

Quick Start

In this showcase we will download the aligned reads and their index (BAM and BAI) from the server:

import resdk

# Create a Resolwe object to interact with the server
res = resdk.Resolwe(url='https://app.genialis.com')

# Enable verbose logging to standard output
resdk.start_logging()

# Get sample meta-data from the server
sample = res.sample.get('resdk-example')

# Download files associated with the sample
sample.download()

Both files (BAM and BAI) have downloaded to the working directory. Check them out. To learn more about the Resolwe SDK continue with Getting started.

If you do not have access to the Resolwe server, contact us at info@genialis.com.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

resdk-22.2.0.tar.gz (272.7 kB view details)

Uploaded Source

Built Distribution

resdk-22.2.0-py3-none-any.whl (98.3 kB view details)

Uploaded Python 3

File details

Details for the file resdk-22.2.0.tar.gz.

File metadata

  • Download URL: resdk-22.2.0.tar.gz
  • Upload date:
  • Size: 272.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.8

File hashes

Hashes for resdk-22.2.0.tar.gz
Algorithm Hash digest
SHA256 cbb0e2d2cca5e69093e3af5eac21c296b08ccee74619820a5aeb89c9553cd010
MD5 353046717354bb117c639b4ef81e70bb
BLAKE2b-256 dd523cbee9983ced7be52c64d07ebd37563d10198121e636d4605addd84673a4

See more details on using hashes here.

Provenance

The following attestation bundles were made for resdk-22.2.0.tar.gz:

Publisher: ci.yaml on genialis/resolwe-bio-py

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file resdk-22.2.0-py3-none-any.whl.

File metadata

  • Download URL: resdk-22.2.0-py3-none-any.whl
  • Upload date:
  • Size: 98.3 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.8

File hashes

Hashes for resdk-22.2.0-py3-none-any.whl
Algorithm Hash digest
SHA256 c7cf29eac227d465743169201c937deadf47042ffda33b8f31abf7bc62ed9a1f
MD5 9f5ca4a4ca91ec3c3b23c00862b82d56
BLAKE2b-256 b69aec5b5372e25469de571e5d3fcf1e190ce902c84912e8669651636eb6ef04

See more details on using hashes here.

Provenance

The following attestation bundles were made for resdk-22.2.0-py3-none-any.whl:

Publisher: ci.yaml on genialis/resolwe-bio-py

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page