Bioinformatics pipelines for the Resolwe platform
Docs & Help
Read about getting started and how to write processes in the documentation.
To chat with developers or ask for help, join us on Slack.
Resolwe requires PostgreSQL (9.4+). Many Linux distributions already include the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+) and you can simply install it via distribution’s package manager. Otherwise, follow these instructions.
The preferred way to install the C compiler and Python development files is to use your distribution’s packages, if they exist. For example, on a Fedora/RHEL-based system, that would mean installing gcc and python3-devel packages.
pip install resolwe-bio
To install a pre-release, use:
pip install --pre resolwe-bio
Using source on GitHub
pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz
where <git-tree-ish> can represent any commit SHA, branch name, tag name, etc. in Resolwe Bioinformatics’ GitHub repository. For example, to install the latest Resolwe Bioinformatics from the master branch, use:
pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz
We welcome new contributors. To learn more, read Contributing section of the documentation.
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