A python graph library implemented in Rust
Project description
retworkx
- You can see the full rendered docs at: https://qiskit.org/documentation/retworkx
retworkx is a general purpose graph library for python3 written in Rust to take advantage of the performance and safety that Rust provides. It was built as a replacement for qiskit's previous (and current) networkx usage (hence the name) but is designed to provide a high performance general purpose graph library for any python application. The project was originally started to build a faster directed graph to use as the underlying data structure for the DAG at the center of qiskit-terra's transpiler, but it has since grown to cover all the graph usage in Qiskit and other applications.
Installing retworkx
retworkx is published on pypi so on x86_64, i686, ppc64le, s390x, and aarch64 Linux systems, x86_64 on Mac OSX, and 32 and 64 bit Windows installing is as simple as running:
pip install retworkx
This will install a precompiled version of retworkx into your python environment.
Installing on a platform without precompiled binaries
If there are no precompiled binaries published for your system you'll have to
build the package from source. However, to be able able to build the package
from the published source package you need to have rust >=1.41.1 installed (and
also cargo which is normally included with
rust) You can use rustup (a cross platform installer for
rust) to make this simpler, or rely on
other installation methods.
A source package is also published on pypi, so you still can also run the above
pip
command to install it. Once you have rust properly installed, running:
pip install retworkx
will build retworkx for your local system from the source package and install it just as it would if there was a prebuilt binary available.
Note: To build from source you will need to ensure you have pip >=19.0.0
installed, which supports PEP-517, or that you have manually installed
setuptools-rust
prior to running pip install retworkx
. If you recieve an
error about setuptools-rust
not being found you should upgrade pip with
pip install -U pip
or manually install setuptools-rust
with
pip install setuptools-rust
and try again.
Optional dependencies
If you're planning to use the retworkx.visualization
module you will need to
install optional dependencies to use the functions. The matplotlib based drawer
function retworkx.visualization.mpl_draw
requires that the
matplotlib library is installed. This can be
installed with pip install matplotlib
or when you're installing retworkx with
pip install 'retworkx[mpl]'
. If you're going to use the graphviz based drawer
function retworkx.visualization.graphviz_drawer
first you will need to install
graphviz, instructions for this can be found here:
https://graphviz.org/download/#executable-packages. Then you
will need to install the pillow Python library.
This can be done either with pip install pillow
or when installing retworkx
with pip install 'retworkx[graphviz]'
.
If you would like to install all the optional Python dependencies when you
install retworkx you can use pip install 'retworkx[all]'
to do this.
Using retworkx
Once you have retworkx installed you can use it by importing retworkx. All the functions and graph classes are off the root of the package. For example, calculating the shortest path between A and C would be:
import retworkx
graph = retworkx.PyGraph()
# Each time add node is called, it returns a new node index
a = graph.add_node("A")
b = graph.add_node("B")
c = graph.add_node("C")
# add_edges_from takes tuples of node indices and weights,
# and returns edge indices
graph.add_edges_from([(a, b, 1.5), (a, c, 5.0), (b, c, 2.5)])
# Returns the path A -> B -> C
retworkx.dijkstra_shortest_paths(graph, a, c, weight_fn=float)
Building from source
The first step for building retworkx from source is to clone it locally with:
git clone https://github.com/Qiskit/retworkx.git
retworkx uses PyO3 and
setuptools-rust to build the
python interface, which enables using standard python tooling to work. So,
assuming you have rust installed, you can easily install retworkx into your
python environment using pip
. Once you have a local clone of the repo, change
your current working directory to the root of the repo. Then, you can install
retworkx into your python env with:
pip install .
Assuming your current working directory is still the root of the repo. Otherwise you can run:
pip install $PATH_TO_REPO_ROOT
which will install it the same way. Then retworkx is installed in your
local python environment. There are 2 things to note when doing this
though, first if you try to run python from the repo root using this
method it will not work as you expect. There is a name conflict in the
repo root because of the local python package shim used in building the
package. Simply run your python scripts or programs using retworkx
outside of the repo root. The second issue is that any local changes you
make to the rust code will not be reflected live in your python environment,
you'll need to recompile retworkx by rerunning pip install
to have any
changes reflected in your python environment.
Develop Mode
If you'd like to build retworkx in debug mode and use an interactive debugger
while working on a change you can use python setup.py develop
to build
and install retworkx in develop mode. This will build retworkx without
optimizations and include debuginfo which can be handy for debugging. Do note
that installing retworkx this way will be significantly slower then using
pip install
and should only be used for debugging/development.
It's worth noting that pip install -e
does not work, as it will link the python
packaging shim to your python environment but not build the retworkx binary. If
you want to build retworkx in debug mode you have to use
python setup.py develop
.
Authors and Citation
retworkx is the work of many people who contribute to the project at different levels. If you use retworkx in your research, please cite our paper as per the included BibTeX file.
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MD5 | 98df98bd3e36487eb4dc1f1c2af36452 |
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BLAKE2b-256 | 89b836460567dc4a9b63db31e02ada7b23a70d23d7c62f83d9efbd5cfb2a58f1 |
Hashes for retworkx-0.11.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 014f92e656d4495d5265daa70fa72ad8a012c81f92e363cc9d3c82ac7deef02d |
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MD5 | 707b67bc028710095c12d7483a2145c3 |
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BLAKE2b-256 | dc9d71c2bf637de071592912026879bf6605eefe1d1ea87cc488f57507fe903e |
Hashes for retworkx-0.11.0-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 83ee8fa88849a6305aec865bf09a9b638aa9b5a2e38f3b7e96327652133952ae |
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MD5 | f3bd3d5028d59c1121f4464d4d39176d |
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BLAKE2b-256 | c960cf6781b2c88c2f3c022bee0c5b6eccf5281d4fedb470b8619130f45b1a6f |
Hashes for retworkx-0.11.0-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ba4bbcba72200b86d93f034641e5928e3b308c8f315bc4a1732250b6e782da64 |
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MD5 | b0e18a4d46f18aadf7775e50ae287309 |
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BLAKE2b-256 | ba18d1079b9bd31d031bb990a13362246dc5d6ab163257a68a81daba2247abd5 |
Hashes for retworkx-0.11.0-cp36-cp36m-win32.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | cea524a81c9a1c449fe7fa40e33465f00d2fbc29deb44bb8ce028ef16654452f |
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MD5 | 4a4e859e4795c6350dea9ef8824965ae |
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BLAKE2b-256 | e26a585eccfdbc79857191e8d3a4b16e062d2285c188639d1b172c3be9d61890 |
Hashes for retworkx-0.11.0-cp36-cp36m-manylinux_2_17_s390x.manylinux2014_s390x.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f95c37a1a113f0042f0fae42af32c44bb6b460ec09595fbe82f8a11e1237257a |
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MD5 | 86801fab86fbf2f8d23e9c341bad22fd |
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BLAKE2b-256 | cefc1199bc4930fe6f559fe98b63ae11fa14e4a2091869c80b32f70408f509a9 |
Hashes for retworkx-0.11.0-cp36-cp36m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 118e50ecbed38531072af9cc8696cc2baf2d5b24e55a170e5ea9a7136fb2b7a5 |
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MD5 | e311de4c7419561cbf393cae3b79bfbe |
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BLAKE2b-256 | 22c58353dc5020979753aee31bd34bdfa63dff6a30ca576d7d895ee0aeb7b170 |
Hashes for retworkx-0.11.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5a31a1e2d23ee5b57a227a71360f5c76a618e7f081117530acacca1948cb0770 |
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MD5 | 318a3115b504a1b52b741d20757bfd0e |
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BLAKE2b-256 | bc65150c86eeb2288ce12f19de281675ca89f5b0d75d60bc9079aeae081f4c3b |
Hashes for retworkx-0.11.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 39834f5f8335bdbeca78cbeb4b545f8e3f3f55817a659e8599dcba56a1f91251 |
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MD5 | ee014b0fad0f2ce21a2acdc4ebd555ee |
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BLAKE2b-256 | c8c99881986c52bf14cb1cfff3dcb0a2181c7cb92e4ac1dd4526a07ba55ae22a |
Hashes for retworkx-0.11.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 4f7d151b725b1dc471a73b87d8951019171acafcfe32f52a770a87661a249c8e |
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MD5 | 44c547bcf3baf593bf8b4c110c605a8c |
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BLAKE2b-256 | 9f3d75eac3c3223ce1526159455927e3ba6c2a8675cce3623d7fb8b184f1db13 |
Hashes for retworkx-0.11.0-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 99f4ed97ab5342c0f10bdec440e6b0950c1483c1c9724d82a5601a31fb941f88 |
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MD5 | bcec71b666975404434670870c6f4ecc |
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BLAKE2b-256 | a72f2c2d43902fecb7cf1dab68e10d876c1d8f2d23e2c9593b6dbf9bce323775 |