Hierarchichal data format based on hdf5 for ribosome profiling data
Project description
ribogadgets_alpha
This repository is a predecessor of ribogadgets. Once we have the basic functionalities, we will move this project to beta phase.
ribogadgets
ribogadgets is a set of tools to create, process, dump, analyze and visualize .ribo files. It provides a CLI (Command L:ine Interface) and Application Programming Interface (API).
Installation
NOTE
This is a temporary way of installing ribogadgets. Soon, we plan to have pip and / or conda repositories for ribogadgets.
For now, you can install using. Although pip resolves dependencies and install required packages, it is highly recommended that you install the dependencies using conda prior to issuing the pip installation command.
pip install git+https://github.com/hakanozadam/ribogadgets_alpha.git
To create a conda environment "ribogadgets" and install dependencies using oconda:
conda env create -f environment environment.yml
After the above command you can install ribogadgets via pip, as described above.
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