ribotools 1.0.4

Ribo-seq analysis tools associated with the Rp-Bp package and more

Ribotools

Ribotools, an add-on to Rp-Bp, is a toolbox for the analysis of matched ribosome profiling (Ribo-seq) and RNA sequencing (RNA-seq) data.

Ribotools can be used to generate count tables, starting from raw, trimmed reads, or existing alignments, taking into consideration Ribo-seq periodicity estimates and RNA-seq fragment length. Ribotools include scripts to perform translation efficiency (TE) analysis, accommodating for sample-to-sample variance, complex experimental designs, or confounding factors, and classifies features into different regulatory layers.

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Documentation

Consult the user guide for instructions on how to install the package and detailed usage instructions.

How to report issues

For bugs, issues, or feature requests, use the bug tracker. Follow the instructions and guidelines given in the templates.

License

The MIT License (MIT). Copyright (c) 2019 Etienne Boileau.