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Righteous Pathway Factor Analysis

Project description

Righteous Pathway Factor Analysis

Decomposes a set of expressions into a group expression using factor analysis. The expression regulation can be studied via an ANOVA that relates it to the observables in the journal file. The final p values are then FDR corrected and the resulting q values are produced.

The journal and analyte expression file must be ordered the same way with respect to the samples that are positioned on the columns.

Visit the active code via : https://github.com/richardtjornhammar/righteous https://pypi.org/project/righteous-fa/ https://zenodo.org/record/3445967 with doi: 10.5281/zenodo.3445967

Download the data used in the examples from: https://zenodo.org/record/3407557

That can be recreated by using the scripts and instructions in: https://zenodo.org/record/3406460

Install with : pip install righteous-fa

Examples can be run by issuing:

: from righteous.examples import * : run_MS()

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