rnalib 0.0.3

A python-based transcriptomics library

rnalib: a Python-based transcriptomics library

Rnalib is a python library for handling transcriptomics data.

Installation

To install the latest version of rnalib, use the following command:

pip install rnalib

Quickstart

Please see the rnalib's documentation for more information.

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Tutorials

We also provide a set of tutorials for further demonstrating rnalib's API:

• Tutorial: Read mismatch analysis
• Tutorial: Comparison of gene annotation sets
• Tutorial: shRNA analysis
• Tutorial: Transcriptome analysis

We also showcase how the combination of (the strengths of) multiple genomics libraries leads to an overall benefit in multiple tutorials:

• Tutorial: CTCF analysis with rnalib and bioframe
• Tutorial: Expression analysis with rnalib and genemunge
• We also compare rnalib to other genomics libraries wrt. performance in this RelatedWork notebook.